Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   119304
Name   oriT_pA32H3 in_silico
Organism   Psychrobacter sp. strain ANT_H32
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MN657070 (8146..8165 [+], 20 nt)
oriT length   20 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 20 nt

>oriT_pA32H3
GTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12206 GenBank   WP_193216008
Name   mobQ_H5F39_RS00045_pA32H3 insolico UniProt ID   _
Length   493 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 493 a.a.        Molecular weight: 56502.41 Da        Isoelectric Point: 6.6800

>WP_193216008.1 MobQ family relaxase [Psychrobacter sp.]
MAIYHLSVKTFSRSNGQSATAAVAYRAGAKIHCDHERRDHDYSKKRDVLHSEIFLPPNAPSWANDRQQLW
NEVERAEKRKNSTVAREFEVALPNELNEKQRIALVQDFSKQIVARHGCAVDAHLHDDKASYKSKENQHAH
IMLTTRRLEPEGFTKKTRELDEKKSGEVVYWREQWAKTANEHLREYGIEIDHRSLKDQGLEREPTIKMGV
AASALERRGIKTDRGDINREVAKYNKVLETNSNEKINDILRKQLKQATELHNKLQFIKRRLPEVKRDIAE
KQPKLYQAFDDLGIPTAEPEPIRSIDDEQERERIEPISEQVDRSPSLESHSNERGRELPPVGSSESNELG
QGHTSEVRSENKAVTSTAPRDIAERPQQPLEPYEPQQAIQASLQPDNQAVVAKQEELVQQTELLTESPEQ
EAIRVNIEAVKRMVSEVYANEPEKLKKMLNAIDDKIPDIMSGEVVLPPIKIKTKPERVAVKTPKSDKDQD
IER

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-218)


  Protein structure



No available structure.




Host bacterium

ID   19734 GenBank   NZ_MN657070
Plasmid name   pA32H3 Incompatibility group   -
Plasmid size   8661 bp Coordinate of oriT [Strand]   8146..8165 [+]
Host baterium   Psychrobacter sp. strain ANT_H32

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -