Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 119303
• Name: oriT_pA27P3
• Organism: Psychrobacter sp. strain ANT_P27
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MN657063 (5136..5155 [+], 20 nt)
• oriT length: 20 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 20 nt

>oriT_pA27P3
GTTTGCATAAGTGCGCCCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_H5F33_RS00025_pA27P3

• ID: 12205
• GenBank: WP_181716981
• Name: mobQ_H5F33_RS00025_pA27P3
• UniProt ID: _
• Length: 557 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 557 a.a.
• Molecular weight: 64270.74 Da
• Isoelectric Point: 6.4792

>WP_181716981.1 MobQ family relaxase [Psychrobacter sp.]
MAIYHLSVKTFSRSNGQSATAAVAYRAGAKIHCDHERRDHDYSKKRDVIHSEIFLPPNAPSWATDRQQLW
NEVERAEKRKNSTVAREFEVALPNELNEEQRIALVQDFAKQIVARHGCAVDAHLHDDKASYKSKENQHAH
IMLTTRRLEPEGFTKKTRELDEKKSGEVVYWREQWAKTANEHLREYGIEIDHRSLKDQGLEREPTIKMGV
AASALERKGVKTDRGDINREVAKYNKVLETNSNEKINEILRKQLKQATELHNKLQFIKRRLPEVKRDIAE
KQPKLYQAFDYLGIPTAEPEPIRSVDHEQERERIEPVSEQVDRSPSIESDSNERGRELPPVGSSESNELG
QGHTSEVRSENKAVTSTAPRDIAEPPQQTTEPVQQPKVPQAKEEAVKAPTAPNRADEIAEKRLLVKDFVH
RCKEMAEQTHRSQLEALQAQAKPIYTEIERLKDNEPWNPFKTKAWQAELDKKVAQHNEIKSSFDDLKNQG
VTPELIQAVHAEEHRRNPTEYQSISAMEDEVVAYDQEQIEVLREQRQQLALQHQEMKADRVDKDIEY

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-218)

Protein structure

No available structure.

Host bacterium

• ID: 19733
• GenBank: NZ_MN657063
• Plasmid name: pA27P3
• Incompatibility group: -
• Plasmid size: 7245 bp
• Coordinate of oriT [Strand]: 5136..5155 [+]
• Host baterium: Psychrobacter sp. strain ANT_P27

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -