Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 119213
• Name: oriT_CCSM0123|unnamedC
• Organism: Staphylococcus capitis strain CCSM0123
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP110787 (2043..2140 [+], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): 30..36, 40..46 (TTGGGGA..TCCCCAA) 1..7, 12..18 (TTTTTTC..GAAAAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_CCSM0123|unnamedC
TTTTTTCGTCAGAAAAAATCTTAAGGGGCTTGGGGAGTATCCCCAACAAGCTGGCGCGTATGACACGTTAGTGGCTAGCAAAGCCAGTGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_OP858_RS12615_CCSM0123|unnamedC

• ID: 12156
• GenBank: WP_267263633
• Name: Relaxase_OP858_RS12615_CCSM0123|unnamedC
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38408.20 Da
• Isoelectric Point: 7.0619

>WP_267263633.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus capitis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRKQQERDSDTECQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 19643
• GenBank: NZ_CP110787
• Plasmid name: CCSM0123|unnamedC
• Incompatibility group: -
• Plasmid size: 7369 bp
• Coordinate of oriT [Strand]: 2043..2140 [+]
• Host baterium: Staphylococcus capitis strain CCSM0123

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -