Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 119052 |
| Name | oriT_p_III  |
| Organism | Paracoccus aminovorans strain BM109 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP109866 (20336..20367 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 3..10, 14..21 (ACATTGTC..GACAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_p_III
GCACATTGTCGAAGACAATGTATAAGCGCGCA
GCACATTGTCGAAGACAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 12036 | GenBank | WP_323718698 |
| Name | mobQ_OH746_RS21220_p_III |
UniProt ID | _ |
| Length | 389 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 389 a.a. Molecular weight: 44105.42 Da Isoelectric Point: 10.1342
>WP_323718698.1 MobQ family relaxase [Paracoccus aminovorans]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGLEHDYSRKGGVVHSEIMAPENAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELDRGERLELLRGFVQREFVDRGMIADVAVHEGKARDGQGQPHAHV
MLSMRELTGEGFGKKDRSWNAPDLLMGWREAWARDANRALERAGRSERIDHRSLDVQRAQVEEQVERARG
GGQDDLALVYEKKVVELSREPEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRLELM
ERGRAFIAGARERLDRLWGRAEAALSRIKERVMGEIERPQVGAERGDMDARRAAVLGREATRSELQAPDV
GRERIAPDDPDRDRRNAILGRGREGTSERGKSYDRDRGR
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGLEHDYSRKGGVVHSEIMAPENAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELDRGERLELLRGFVQREFVDRGMIADVAVHEGKARDGQGQPHAHV
MLSMRELTGEGFGKKDRSWNAPDLLMGWREAWARDANRALERAGRSERIDHRSLDVQRAQVEEQVERARG
GGQDDLALVYEKKVVELSREPEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRLELM
ERGRAFIAGARERLDRLWGRAEAALSRIKERVMGEIERPQVGAERGDMDARRAAVLGREATRSELQAPDV
GRERIAPDDPDRDRRNAILGRGREGTSERGKSYDRDRGR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 14096 | GenBank | WP_323718699 |
| Name | t4cp2_OH746_RS21140_p_III |
UniProt ID | _ |
| Length | 614 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 614 a.a. Molecular weight: 67823.37 Da Isoelectric Point: 9.8507
>WP_323718699.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus aminovorans]
MSFVLEARHWVMIVGAVILAAAAMIYLPQWVAIYPITTWAFPIIALAVILDTLGTAAERHRTPLKALAWL
CLCTAALTALTPLRGPLSDMLATIRTWTGAGWPLPRAIWEGLRGLARYSDPHIQAMAISFALGAFGVAVA
VSAPLVAVFNPRIGRNRKSRTGPWQAGWMNPRDIAQLARNRTGLPLALHKGKLLRYLKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIMTQEDPEQRNLISVADLLLSANLDATL
EAWAENKDIVGHRPAQTAATILRAGDRERGSIQTAISKAFEWMQADNMRHFLAGSSFRMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKTQNEGRDLSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLRAKQNVYFKSKAYRGRFDQNPLN
MSFVLEARHWVMIVGAVILAAAAMIYLPQWVAIYPITTWAFPIIALAVILDTLGTAAERHRTPLKALAWL
CLCTAALTALTPLRGPLSDMLATIRTWTGAGWPLPRAIWEGLRGLARYSDPHIQAMAISFALGAFGVAVA
VSAPLVAVFNPRIGRNRKSRTGPWQAGWMNPRDIAQLARNRTGLPLALHKGKLLRYLKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIMTQEDPEQRNLISVADLLLSANLDATL
EAWAENKDIVGHRPAQTAATILRAGDRERGSIQTAISKAFEWMQADNMRHFLAGSSFRMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKTQNEGRDLSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLRAKQNVYFKSKAYRGRFDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 19484 | GenBank | NZ_CP109866 |
| Plasmid name | p_III | Incompatibility group | - |
| Plasmid size | 20763 bp | Coordinate of oriT [Strand] | 20336..20367 [+] |
| Host baterium | Paracoccus aminovorans strain BM109 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |