Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 119050
• Name: oriT_pCM-BC1-5
• Organism: Pediococcus inopinatus strain BC1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP104773 (2613..2634 [-], 22 nt)
• oriT length: 22 nt
• IRs (inverted repeats): 3..10, 15..22 (AAGTATAA..TTATACTT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 22 nt

>oriT_pCM-BC1-5
TAAAGTATAATGTGTTATACTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_N6G94_RS10815_pCM-BC1-5

• ID: 12035
• GenBank: WP_323709147
• Name: mobV_N6G94_RS10815_pCM-BC1-5
• UniProt ID: _
• Length: 365 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 365 a.a.
• Molecular weight: 42934.31 Da
• Isoelectric Point: 9.9443

>WP_323709147.1 MobV family relaxase [Pediococcus inopinatus]
MSFAVATMKKMKQENLPGIEHHDQREFKKHSNKDIDPSRSDQNYDLVNSSPIDFKKNTMDFINAHKKSAR
AVRKDAVVMDEWIISSDQAFFKNMNNQEIKHYFETAVNYFKENYGTENVRYADVHMDETTPHMHMGIVPF
TKDYRLSSKDVFNRMALRKIQDDFPKYMQDHGFDVERGHEDSERKKLTVKEYKQVQAEIHKQNERRNKTR
HSISENIKSIAPNTYINYRNGKKSEAISTDDGFRAFLKQSVNWLTNVLLHQLQHWKDKLHKQAVSLDNRE
QGLIQREHDLQEKAKELNSSDIAIYKQKSEVYEEAINRLPFKTKMTVLNQLTSVQKEQQSTAQRNLKGNQ
KNFGVGLNHKNGLQR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 19482
• GenBank: NZ_CP104773
• Plasmid name: pCM-BC1-5
• Incompatibility group: -
• Plasmid size: 5321 bp
• Coordinate of oriT [Strand]: 2613..2634 [-]
• Host baterium: Pediococcus inopinatus strain BC1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -