Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   119049
Name   oriT_pCM-BC1-3 in_silico
Organism   Pediococcus inopinatus strain BC1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP104771 (3037..3057 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pCM-BC1-3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12034 GenBank   WP_323715438
Name   mobQ_N6G94_RS10460_pCM-BC1-3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80300.87 Da        Isoelectric Point: 9.4664

>WP_323715438.1 MobQ family relaxase [Pediococcus inopinatus]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKVFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKRADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLARQLLAFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKVNIGHYQPLNYKSVSPSY
YLKTAFSNAIMTALYARDEDYERQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   19481 GenBank   NZ_CP104771
Plasmid name   pCM-BC1-3 Incompatibility group   -
Plasmid size   40565 bp Coordinate of oriT [Strand]   3037..3057 [-]
Host baterium   Pediococcus inopinatus strain BC1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21