Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   119029
Name   oriT_pS130a in_silico
Organism   Staphylococcus aureus S130
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AUPT01000023 (4540..4577 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      14..22, 29..37  (TAAAGTATA..TATACTTTA)
 2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pS130a
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   12032 GenBank   WP_021286045
Name   mobV_M398_RS27690_pS130a insolico UniProt ID   _
Length   408 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 48242.54 Da        Isoelectric Point: 6.4131

>WP_021286045.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDISLSKLNYDLVDRTQNYKTDIENFINENKSTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIARGQKGSERKNLTVPEFKKLKEEELEIKKELQIKKD
ELIAYTKENQIDKKLDITPIKEMEDIEIETDEKTLFGKNKTEIVRQWTGNIILSENDYLKLNEEIKKGKK
TEGRLAAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKSQIGDLKEEIKLIY
QSTKRFLKDRISDFKAFKEVFKELADNISNISREKGLDSSFKKEFDRENKKKQTRGIR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   19461 GenBank   NZ_AUPT01000023
Plasmid name   pS130a Incompatibility group   -
Plasmid size   8882 bp Coordinate of oriT [Strand]   4540..4577 [+]
Host baterium   Staphylococcus aureus S130

Cargo genes

Drug resistance gene   erm(C), tet(L), aadD
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -