Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   119008
Name   oriT_Dog022|unnamed2 in_silico
Organism   Staphylococcus aureus strain Dog022
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP120172 (783..971 [-], 189 nt)
oriT length   189 nt
IRs (inverted repeats)      149..156, 161..168  (CTATCATT..AATGATAG)
 132..138, 142..148  (GTCTGGC..GCCAGAC)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 189 nt

>oriT_Dog022|unnamed2
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   19440 GenBank   NZ_CP120172
Plasmid name   Dog022|unnamed2 Incompatibility group   -
Plasmid size   3123 bp Coordinate of oriT [Strand]   783..971 [-]
Host baterium   Staphylococcus aureus strain Dog022

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -