Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118987
• Name: oriT_pCM-BB2-3
• Organism: Pediococcus inopinatus strain BB2
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP104777 (1460..1481 [+], 22 nt)
• oriT length: 22 nt
• IRs (inverted repeats): 3..10, 15..22 (AAGTATAA..TTATACTT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 22 nt

>oriT_pCM-BB2-3
TAAAGTATAATGTGTTATACTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_N6G95_RS10980_pCM-BB2-3

• ID: 12028
• GenBank: WP_323707597
• Name: mobV_N6G95_RS10980_pCM-BB2-3
• UniProt ID: _
• Length: 356 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 356 a.a.
• Molecular weight: 42042.59 Da
• Isoelectric Point: 9.8235

>WP_323707597.1 MobV family relaxase [Pediococcus inopinatus]
MSFAVATMKKMKQENLPGIEHHDQREFKKHSNKDIDPSRSDQNYDLVNSSPIDFKKNTMDFINAHKKSAR
AVRKDAVVMDEWIISSDQAFFKNMNNQEIKHYFETAVNYFKENYGTENVRYADVHMDETTPHMHMGIVPF
TKDYRLSSKDVFNRMALRKIQDDFPKYMQDHGFDVERGHEDSERKKLTVKEYKQVQAEIHKQNERRNKTR
HSISENIKSIAPNTYINYRNGKKSEAISTDDGFRAFLKQSVNWLTNVLLHQLQHWKDKLHKQAVSLDNRE
QGLIQREHDLQEKAKELNSSDIAIYKQKSEVYEEAINRLPFKTKMTVLNQLTSVQKNNNLLHSAILKEIR
KILVWV

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 19419
• GenBank: NZ_CP104777
• Plasmid name: pCM-BB2-3
• Incompatibility group: -
• Plasmid size: 5316 bp
• Coordinate of oriT [Strand]: 1460..1481 [+]
• Host baterium: Pediococcus inopinatus strain BB2

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -