Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118733
• Name: oriT_pWP3-W18-CRE-02_12
• Organism: Klebsiella quasipneumoniae strain WP3-W18-CRE-02
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AP021962 (2627..2660 [-], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_pWP3-W18-CRE-02_12
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_H7R86_RS30945_pWP3-W18-CRE-02_12

• ID: 11891
• GenBank: WP_047359293
• Name: mobV_H7R86_RS30945_pWP3-W18-CRE-02_12
• UniProt ID: _
• Length: 322 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 322 a.a.
• Molecular weight: 36621.51 Da
• Isoelectric Point: 10.2445

>WP_047359293.1 MULTISPECIES: MobV family relaxase [Enterobacterales]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYQSINRGTRSQVSISPDALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGLAGTIAMASQSAQNAKRVRELQKTMDSQQKRLQSVTEPFKGLSREQ
MTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 19165
• GenBank: NZ_AP021962
• Plasmid name: pWP3-W18-CRE-02_12
• Incompatibility group: -
• Plasmid size: 2694 bp
• Coordinate of oriT [Strand]: 2627..2660 [-]
• Host baterium: Klebsiella quasipneumoniae strain WP3-W18-CRE-02

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -