Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118525 |
| Name | oriT_pSauR144-1  |
| Organism | Staphylococcus aureus strain SauR144 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAHMGX010000027 (21468..21645 [+], 178 nt) |
| oriT length | 178 nt |
| IRs (inverted repeats) | 152..157, 167..172 (ATTTTA..TAAAAT) 107..112, 119..124 (CCCCAT..ATGGGG) 89..95, 99..105 (ATCTGGC..GCCAGAT) 44..51, 64..71 (GTCTTTTT..AAAAAGAC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 178 nt
>oriT_pSauR144-1
TGTGACAAACGCAATATATTGTGTCGCAAAAGTGTGACATTTCGTCTTTTTATGCCCCCATGCAAAAAGACCGACGAAGTCTTGAAATATCTGGCTTTGCCAGATCCCCCATTCATTGATGGGGACAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
TGTGACAAACGCAATATATTGTGTCGCAAAAGTGTGACATTTCGTCTTTTTATGCCCCCATGCAAAAAGACCGACGAAGTCTTGAAATATCTGGCTTTGCCAGATCCCCCATTCATTGATGGGGACAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 18958 | GenBank | NZ_JAHMGX010000027 |
| Plasmid name | pSauR144-1 | Incompatibility group | - |
| Plasmid size | 35332 bp | Coordinate of oriT [Strand] | 21468..21645 [+] |
| Host baterium | Staphylococcus aureus strain SauR144 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | arsR, arsB, arsC, mco |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |