Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   118439
Name   oriT_pSHV3 in_silico
Organism   Sphingobium herbicidovorans strain MH
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP020542 (42..74 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pSHV3
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11716 GenBank   WP_231568057
Name   mobQ_B6S01_RS20755_pSHV3 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 45805.03 Da        Isoelectric Point: 9.9572

>WP_231568057.1 MULTISPECIES: MobQ family relaxase [Sphingomonadaceae]
MASKGAAMASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHNALVVPADAPAWA
SDRAVLWNAAEQAETRKNSTVAREYEIALPAELSAEARRELALGLAREISERHGVAVDVAIHAPGREGDH
RNHHAHLLTTTRRIGPEGLGAKTRELDQKTSGEIERWRGRWAEMQNAALERANVPERVDHRSHQRRGIEQ
EATVHMGPSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIEQRGLRQYIERGTEWLRDAGLRISGRLH
AFAATLSGAVDRDRRDAAEAQRQERLVAERTREQAQERQQAQDREKVAEKFRTIAGKREAGGHGYGDHNS
DWKATPEALRKAVDAYNGANQHTKDLYIERIQREPQMARAVGQLLHERELVLQRDRGMSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(24-226)


  Protein structure



No available structure.




Host bacterium

ID   18872 GenBank   NZ_CP020542
Plasmid name   pSHV3 Incompatibility group   -
Plasmid size   9968 bp Coordinate of oriT [Strand]   42..74 [-]
Host baterium   Sphingobium herbicidovorans strain MH

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -