Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118438 |
| Name | oriT_pSY2  |
| Organism | Sphingobium chungbukense |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_016000 (427..459 [-], 33 nt) |
| oriT length | 33 nt |
| IRs (inverted repeats) | 3..9, 13..19 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 33 nt
>oriT_pSY2
GCACATTGCGAAGCAATGTATAAGCGTGCCCTT
GCACATTGCGAAGCAATGTATAAGCGTGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 11715 | GenBank | WP_014082619 |
| Name | mobQ_HS826_RS00010_pSY2 |
UniProt ID | G3KB97 |
| Length | 361 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 361 a.a. Molecular weight: 40963.27 Da Isoelectric Point: 8.0360
>WP_014082619.1 MobQ family relaxase [Sphingobium chungbukense]
MAIYHCSVKVISRATGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRSRLW
NGVEAAEKRKDAQLAREVEISLPRELGAEDRRALVEGYVREHFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNASERLEGWRAAWADHANRALERAGHDERIDHRSLKDQREAARERGDAERE
EDLGREPLGKVPLSAVAMERKGIITERGDEQRGVQARNRERRELTQQLRDLSARIAETMRGIGDKAKDVA
QGLRDRLSAAWGSQAEDRGAAERIAEATAQRGERNRDAPEPRSAAERIASRIGDKGGSDHDQAERDRERT
RDKDRDRGRER
MAIYHCSVKVISRATGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRSRLW
NGVEAAEKRKDAQLAREVEISLPRELGAEDRRALVEGYVREHFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNASERLEGWRAAWADHANRALERAGHDERIDHRSLKDQREAARERGDAERE
EDLGREPLGKVPLSAVAMERKGIITERGDEQRGVQARNRERRELTQQLRDLSARIAETMRGIGDKAKDVA
QGLRDRLSAAWGSQAEDRGAAERIAEATAQRGERNRDAPEPRSAAERIASRIGDKGGSDHDQAERDRERT
RDKDRDRGRER
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G3KB97 |
T4CP
| ID | 13717 | GenBank | WP_014082634 |
| Name | t4cp2_HS826_RS00085_pSY2 |
UniProt ID | _ |
| Length | 514 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 514 a.a. Molecular weight: 55917.09 Da Isoelectric Point: 8.5981
>WP_014082634.1 type IV secretory system conjugative DNA transfer family protein [Sphingobium chungbukense]
MFNLRSSTWPKSQLRADWAILLGTQWLLEKILPVSIASTIAWAALVAFGVAVWKFNRRYGRNELLGSAAF
GSRADVRGLESNGGDLLIGRSAKSGKLLRYGGPAHLLTMAPTRSGKGVGTIIPNLLTIDRSVICIDPKGE
NARVTARARAAKGKVWCLDPFEVSGHPPARYNPLDRLDPASLDLAEDAMTLADALVHDSAGQGGDAHWNE
EAKALIAGLILYAVVHEDREHRTLATVRDYLTLAPKGFADLLTLMQDSRGAGGLIARAANRQLGKSDREA
AGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKDGVSTVFLCLPPDRLDAYSRWLRLLVAQALTDMARS
PAKPARPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFMSNAGVFQAFG
VNDLTTAELLSKTLGQETLEYQTAGYSEASMFDGGKLTRSASTQISARNLMNPDEIMRMRPTDQLLMLQG
QAPLIVEKIRYYDQREFAGLADPG
MFNLRSSTWPKSQLRADWAILLGTQWLLEKILPVSIASTIAWAALVAFGVAVWKFNRRYGRNELLGSAAF
GSRADVRGLESNGGDLLIGRSAKSGKLLRYGGPAHLLTMAPTRSGKGVGTIIPNLLTIDRSVICIDPKGE
NARVTARARAAKGKVWCLDPFEVSGHPPARYNPLDRLDPASLDLAEDAMTLADALVHDSAGQGGDAHWNE
EAKALIAGLILYAVVHEDREHRTLATVRDYLTLAPKGFADLLTLMQDSRGAGGLIARAANRQLGKSDREA
AGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKDGVSTVFLCLPPDRLDAYSRWLRLLVAQALTDMARS
PAKPARPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFMSNAGVFQAFG
VNDLTTAELLSKTLGQETLEYQTAGYSEASMFDGGKLTRSASTQISARNLMNPDEIMRMRPTDQLLMLQG
QAPLIVEKIRYYDQREFAGLADPG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 18871 | GenBank | NC_016000 |
| Plasmid name | pSY2 | Incompatibility group | - |
| Plasmid size | 18779 bp | Coordinate of oriT [Strand] | 427..459 [-] |
| Host baterium | Sphingobium chungbukense |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |