Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   118437
Name   oriT_pYAN-1 in_silico
Organism   Sphingobium yanoikuyae
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_008246 (1874..1906 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pYAN-1
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11714 GenBank   WP_231292109
Name   mobQ_HXB84_RS00015_pYAN-1 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 45674.74 Da        Isoelectric Point: 9.1376

>WP_231292109.1 MULTISPECIES: MobQ family relaxase [Sphingomonadaceae]
MASKGAAMASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSALVVPTDAPAWA
NDRAALWNAAEQAETRKNSTVAREYEIALPAELSAEARRELALGLAREISERHGVAVDVAIHAPGREGDQ
RNHHAHLLTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNVALERAGSVERVDHRSHQRQGIEQ
EATVHMGPSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIERRGLRQYIERGTEWLRDAGQRISGRLH
AFAATLSGAVDRDRRDAAEAQRQEQLAAERAREQAQERQQAQEREKVADKFRTIAGKREAGAHGYGDHNS
DWKATPEALRKAVDAYNGANQHTKDLYIEQIQREPQMARAVGQLLHERELVLQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(24-226)


  Protein structure



No available structure.




Host bacterium

ID   18870 GenBank   NC_008246
Plasmid name   pYAN-1 Incompatibility group   -
Plasmid size   5182 bp Coordinate of oriT [Strand]   1874..1906 [+]
Host baterium   Sphingobium yanoikuyae

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -