Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   118412
Name   oriT_pLIS3 in_silico
Organism   Listeria monocytogenes strain 766 PZH
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MT912503 (1348..1386 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_pLIS3
CTTTACGCATGTAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11696 GenBank   WP_061092469
Name   mobV_IST58_RS00010_pLIS3 insolico UniProt ID   _
Length   405 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 405 a.a.        Molecular weight: 47877.31 Da        Isoelectric Point: 9.7774

>WP_061092469.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSFAICRMQKMKSHDLKGIQFHNQRERESKTNSDIDKERSHKNYDFVNDENIDYNERVKEIIESQKTGSR
KTRKDAVLVNELLVTSDRDFFERLDPVEQKRFFEESFKLFSERYGEQNIAYATVHNDEKTPHLHIGVVPM
RDGKLQGKNVFNRAELLWMQDKFPEHMQKLGFDLERGEKGSDRQHIETTKYKKQTLEKEIDFLEKNIVTK
KDELTAFIGKVESDLTVPAKRQTKNVEVPTGEKNLFGKEKTKTVKKPTENVIISRTDYKKLVAAAQDNEK
LKIHLKQVLNTDMAKENRELRENYEVLRGKHNDLVHRFNGMVEDHNELVQENKSLKARVSDLKREIGFVY
KSAKDFLEERIRGLSAFRSAFKDLVDKVKEKTPGSEFERLHKRERRLEQNREMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   18845 GenBank   NZ_MT912503
Plasmid name   pLIS3 Incompatibility group   -
Plasmid size   4265 bp Coordinate of oriT [Strand]   1348..1386 [-]
Host baterium   Listeria monocytogenes strain 766 PZH

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -