Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118409
• Name: oriT_SRCM217619|unnamed1
• Organism: Ligilactobacillus salivarius strain SRCM217619
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JAUIQU010000002 (194877..195056 [+], 180 nt)
• oriT length: 180 nt
• IRs (inverted repeats): 105..110, 124..129 (TGAAGT..ACTTCA) 18..23, 30..35 (AGGAAA..TTTCCT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 180 nt

>oriT_SRCM217619|unnamed1
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG

oriT secondary structure

Predicted by RNAfold.

T4CP

t4cp2_QYC42_RS08870_SRCM217619|unnamed1

• ID: 13691
• GenBank: WP_301265834
• Name: t4cp2_QYC42_RS08870_SRCM217619|unnamed1
• UniProt ID: _
• Length: 956 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 956 a.a.
• Molecular weight: 109022.31 Da
• Isoelectric Point: 9.8267

>WP_301265834.1 VirD4-like conjugal transfer protein, CD1115 family [Ligilactobacillus salivarius]
MMRFGKNYDKERANKVDNRTHIIGNPVTLFLLWLIWSYFVSWISAYFTIGFSTLLAWLNSPNSQQALHDG
QLINFDPVMEVWKNTTNFGNYQLAITTNKLLFFGLTIIFSLVMIPIFGKLYYKHRSTNFNQYGNDRFATV
SEVLRQYPQIPDKGYEFSGTGGIPVMHIKPTNPTFIRIHPILFFKYWLLPIIPWTIAKIPLFSINQKDWL
QTFEPAKGFYSIDTTKTSSMIVGISRSGKGETLVMPLIDILSRAKNKVSMVVNDLKGELNRMSYYTLKER
GYDVKVINLDELNFSDSYNPLEIIIKYAKEGYYDKAQKAANVFSSSIYTDPNAKDKFWQNSSINLLNALI
LAVLDYADRNNRWDQVTMDNVLHMMTDLGGKEVMVDQDNNIVSNPQRGQQVSMKSKLTVYFSKLRDLNDV
EYSEFRQMALDSFAQSKFAGEETSGNIYSSAMEGIKLYQQSDIAKMTSLNSLNLESIGFPRVFKAKFSDK
FKFSTAIISFSNDKSVIEEKTVIVDELGNISCPIKSKLPDSFEIKISFAFRKNKAELKDKYVVMKAKKIY
RKKAIGKGSYVLDPYTKKPILKTVRLKVTKIALGKEGKEKSKVLESSLAYSEKPVALFFVTPPNNPAYNQ
LATFAIDQVFNVNYELASANEGETVIPIHYILDEFGNLNTIPNLDTKVTMGLGSRIHFHFVVQNLEQLEL
HYSKQQAATIQSNCANLLYILTNSETTAKFISGQIGKRTVEVNTKNGKALNPHAVNYSGSLVGQDLLSPT
ELTRLMGGEMVVLRSVYRQDTKGRSVSAYPIFDHAATKMPYRYTFLNQEFNSSTKLSDVAIKSRHRSLDL
KAQRINYDTAYTEIIKMIGKNLRSKSATGQVAIQEILSNRIFSDIELENQVLISKVTNYLYSLASRIAPQ
KIESFKDVNFFWKRNNSWNAIKEILEDDIAFESFKNFVTNTKKEVR

Protein domains

Predicted by InterproScan.

• TraM recognition site of TraD and TraG (TraG-D_C) (657-776)

• Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf) (227-477)

Protein structure

No available structure.

Host bacterium

• ID: 18842
• GenBank: NZ_JAUIQU010000002
• Plasmid name: SRCM217619|unnamed1
• Incompatibility group: -
• Plasmid size: 237040 bp
• Coordinate of oriT [Strand]: 194877..195056 [+]
• Host baterium: Ligilactobacillus salivarius strain SRCM217619

Cargo genes

• Drug resistance gene: lnu(C)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: NA, AcrIIC1