Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   118353
Name   oriT_p4-UTDF19-29B in_silico
Organism   Bacillus toyonensis strain UTDF19-29B
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP081876 (1859..1897 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_p4-UTDF19-29B
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11654 GenBank   WP_000006405
Name   mobV_K6T24_RS29600_p4-UTDF19-29B insolico UniProt ID   _
Length   408 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 48201.96 Da        Isoelectric Point: 9.6290

>WP_000006405.1 MULTISPECIES: MobV family relaxase [Bacillus]
MSFAICRMQKFKMRDVKGIQIHNQREKESHTNPDIEKEQSHLNYDLHNDQYIDYLRTVKEKIEQNVETNR
AIRKDAVVMCEFIVTSDRDFFERLSEDNPEYQKEFFEEAYSFLKERYGEQNIIHAAVHLDEKTPHMHVGM
VPVTEEKKLSAKQIFNRKELVSLQDDFHAHMVEKGFNLKRGVSSDKKHIETTRLKALTAKEEVQVLEDTL
LEKGVEKQQIEKSMEQMKNRLNDLKRAVNVGKKVENMSVKEKGGLIRSKTVEIGLEDFQRIKTLAKASEA
FKRENETLQRQNHALKVNNTDLHTTLKHLEKEKKELEPYKAKYERLQKLVAQMQEFYKERVPQGLEKFQQ
IVGYCKKKVNITLNPFSNTRFSEKNLTEHERKGYDLASKDIQKKTKEKNRNRDSGLER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-195)


  Protein structure



No available structure.




Host bacterium

ID   18786 GenBank   NZ_CP081876
Plasmid name   p4-UTDF19-29B Incompatibility group   -
Plasmid size   3188 bp Coordinate of oriT [Strand]   1859..1897 [-]
Host baterium   Bacillus toyonensis strain UTDF19-29B

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -