Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118341 |
| Name | oriT_UP_1395|unnamed  |
| Organism | Staphylococcus aureus strain UP_1395 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP047821 (25151..25390 [-], 240 nt) |
| oriT length | 240 nt |
| IRs (inverted repeats) | 171..178, 183..190 (CTATCATT..AATGATAG) 154..160, 164..170 (GTCTGGC..GCCAGAC) 93..98, 110..115 (AAAAGC..GCTTTT) 24..31, 44..51 (CTTTTTTA..TAAAAAAG) 37..42, 45..50 (TTTTTT..AAAAAA) 36..41, 45..50 (TTTTTT..AAAAAA) 1..7, 20..26 (AAGACAT..ATGTCTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 240 nt
>oriT_UP_1395|unnamed
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGCGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTC
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGCGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 18774 | GenBank | NZ_CP047821 |
| Plasmid name | UP_1395|unnamed | Incompatibility group | - |
| Plasmid size | 27406 bp | Coordinate of oriT [Strand] | 25151..25390 [-] |
| Host baterium | Staphylococcus aureus strain UP_1395 |
Cargo genes
| Drug resistance gene | blaZ |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |