Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118318 |
| Name | oriT_CCSM0287|unnamed2  |
| Organism | Staphylococcus epidermidis strain CCSM0287 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP110613 (2157..2277 [+], 121 nt) |
| oriT length | 121 nt |
| IRs (inverted repeats) | 53..59, 63..69 (TTGGGGA..TCCCCAA) 23..30, 35..42 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 121 nt
>oriT_CCSM0287|unnamed2
AGTGGCTAGCAAATAGCCACTTATTTTTTCTGGCGAAAAAATGCTAAGGGGCTTGGGGAATATCCCCAACAAGCTGGCGCGTCTGCCACGTCAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAAATAGCCACTTATTTTTTCTGGCGAAAAAATGCTAAGGGGCTTGGGGAATATCCCCAACAAGCTGGCGCGTCTGCCACGTCAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 11632 | GenBank | WP_265365505 |
| Name | Relaxase_OO001_RS12025_CCSM0287|unnamed2 |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38375.24 Da Isoelectric Point: 7.5641
>WP_265365505.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDEIREAIDQSTATNMEELQEHLNQYGITIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTEPDTGVTQSD
WNQFAQDTNELERRRQAAESARLVDEKARRDREERVREKQASRPIINNDRDHDLEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDEIREAIDQSTATNMEELQEHLNQYGITIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTEPDTGVTQSD
WNQFAQDTNELERRRQAAESARLVDEKARRDREERVREKQASRPIINNDRDHDLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 18751 | GenBank | NZ_CP110613 |
| Plasmid name | CCSM0287|unnamed2 | Incompatibility group | - |
| Plasmid size | 6823 bp | Coordinate of oriT [Strand] | 2157..2277 [+] |
| Host baterium | Staphylococcus epidermidis strain CCSM0287 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |