Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   118302
Name   oriT_pP47-27 in_silico
Organism   Enterococcus faecium strain P47
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP091101 (17777..17814 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      14..22, 29..37  (TAAAGTATA..TATACTTTA)
 2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site  
 
 GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pP47-27
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   18735 GenBank   NZ_CP091101
Plasmid name   pP47-27 Incompatibility group   -
Plasmid size   27897 bp Coordinate of oriT [Strand]   17777..17814 [-]
Host baterium   Enterococcus faecium strain P47

Cargo genes


Drug resistance gene   poxtA, fexB, tet(L), tet(M)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -