Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118299 |
| Name | oriT_pSAHUG_S20a  |
| Organism | Staphylococcus aureus strain MRSA_S20 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CM003622 (14424..14616 [+], 193 nt) |
| oriT length | 193 nt |
| IRs (inverted repeats) | 167..172, 182..187 (ATTTTA..TAAAAT) 99..106, 110..117 (TATCTGGC..GCCAGATA) 55..62, 75..82 (GTCTTTTT..AAAAAGAC) 33..39, 44..50 (TGTCACA..TGTGACA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 193 nt
>oriT_pSAHUG_S20a
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACATTTCGTCTTTTTATGCCCCCATGCAAAAAGACCGACGAAGTCTTGAAATATCTGGCTTTGCCAGATACCTCATCTATAGATGGGGTCATATTTCCCTTATGCTCTTACTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACATTTCGTCTTTTTATGCCCCCATGCAAAAAGACCGACGAAGTCTTGAAATATCTGGCTTTGCCAGATACCTCATCTATAGATGGGGTCATATTTCCCTTATGCTCTTACTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 18732 | GenBank | NZ_CM003622 |
| Plasmid name | pSAHUG_S20a | Incompatibility group | - |
| Plasmid size | 16620 bp | Coordinate of oriT [Strand] | 14424..14616 [+] |
| Host baterium | Staphylococcus aureus strain MRSA_S20 |
Cargo genes
| Drug resistance gene | blaZ |
| Virulence gene | - |
| Metal resistance gene | arsR, arsB, arsC |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |