Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   118296
Name   oriT_UP_1435|unnamed1 in_silico
Organism   Staphylococcus aureus strain UP_1435
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP047857 (24746..24934 [+], 189 nt)
oriT length   189 nt
IRs (inverted repeats)      149..155, 162..168  (CTATCAT..ATGATAG)
 132..138, 142..148  (GTCTGGC..GCCAGAC)
 62..70, 77..85  (TAGTGTCAC..GTGACACTA)
 33..38, 45..50  (TGTCAC..GTGACA)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 189 nt

>oriT_UP_1435|unnamed1
TGTCACAAAAATAAGACAAAATCTACATGTAGTGTCACAAAACCGTGACAAACACAATATATAGTGTCACGAAAATGTGACACTAGGTGTTTTTATGATATCACTATGAAATGTCCTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATCATTGTCCGATGATAGCAAATTCCCCTTATGCTCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   11623 GenBank   WP_160176696
Name   mobP2_E3S66_RS14535_UP_1435|unnamed1 insolico UniProt ID   _
Length   382 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 382 a.a.        Molecular weight: 45664.89 Da        Isoelectric Point: 9.9507

>WP_160176696.1 MobP2 family relaxase [Staphylococcus aureus]
MPKIVTVSQFEQPNEFYEYSNYVNYMKRGEAQNNKDDFKYDVYAHYMFDEEKSQNMFNEHDNFMSKKAIN
KIKSDFSHAQKNKGMMWKDVISFDNSSLESVGIYDSKTHTLDEQKIKEATRKMMKRFEKKEGLEDNLVWS
GAIHYNTDNIHVHVAAVEKVIKRTRGKRKPATLKHMKSTFANELFDIKGERQKINEFIRERIVKGIRDES
EPCKDKAMKKQIKKVHKLLEDIPRNQRNYNNNILKYIRPEIDKITDIYIKNYHSKDFEVFKNDLKRQTNL
YKETYGENSNYGSYEKTKMKDLYARSGNTILKNIKELDQDLMKVKQQSTHSKSNATITKLKIGKCLNQAL
YRTKYALRSDYDKEKNIQQYYQEFDKQSYRER

  Protein domains


Predicted by InterproScan.

(1-357)


  Protein structure



No available structure.




T4CP


ID   13607 GenBank   WP_001210915
Name   t4cp2_E3S66_RS14485_UP_1435|unnamed1 insolico UniProt ID   _
Length   923 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 923 a.a.        Molecular weight: 106091.07 Da        Isoelectric Point: 8.0720

>WP_001210915.1 VirD4-like conjugal transfer protein, CD1115 family [Staphylococcus aureus]
MRFGSKDKHGYRRKKLSFSQNKHLLAHPCILVSTLLLIMLLATAIANFLINILMTVFFGNHDIFTNMKQL
NTKYTDYIFNFRSDAVLLYIPIWGLVFIFFGKKVYQFRQRFKSLNNNEKASGRFATRKEITQQYKAIPQR
EHAFEGEGGLPVAMFGVYDFVTKTKQYLEQRKTAIREINGITDLTADEKLELRKDKLGKMNKEFATTFFS
KREFTFIDESPTNNLIVGTSRSGKGEIVVLSMIENYSRSSEQPSLIVNDMKGELFSASYKTLENRGYLVE
IFNLDQPMESTMSFNPLQQVIDEYMKGDLGEAQEMTKQITYTLTNNEGVEDNEWNLMAGALINAMILALC
EETLPKNPEKVTLYSVSNMLQTLSTKRFYKEIAIGNKVQLIEVSALDEYMERFPSHSPAKTQYATVQAAP
DKMRSSIIGTALKALQPFTTDTIAKLTSHTSFDINKLGFPSIIDGYATKDSTFELGVQVLRDGENGIEYE
EVEGIQIGVNEYGYWQYPFKTVLKVGDRIETIEKDGNNQVITSYFYVDHIDDKGQVTFNQKGELDNSDIT
IRKFNSFPKPIAVFMVVPDYNNANHGIASILVNQIVFEISKNSQLYTENQSTYRRVIFHLDEAGNMPPIP
NLSQKVNVSLSRGLRFNFFVQAFSQFKDKYGDAYDAIMDACQNKVYIMATQEQTLKDFSAMIGSQQITVH
SRSGEAGAIKSSITENQEERPLLRPDELARLQEGETVVVRNLKRQDKKRNKVMSYPIFNDGKYAMKYRYQ
YLSDLMDTSQSIIHFRPMLKARCEHRHLQLEATLVDWDKRIEEMQEGIDGQKEENKNINDINQYKKSNEE
GNVAVRVKRLETLKDKVGDAVFDKITRRFERYLRTYAEQGKNVNTITQKKLEELVLADSEVKEEEKTKRI
EMIKKLIKEAKTT

  Protein domains


Predicted by InterproScan.

(615-732)

(209-458)

  Protein structure



No available structure.




Host bacterium


ID   18729 GenBank   NZ_CP047857
Plasmid name   UP_1435|unnamed1 Incompatibility group   -
Plasmid size   34909 bp Coordinate of oriT [Strand]   24746..24934 [+]
Host baterium   Staphylococcus aureus strain UP_1435

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21