Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118242 |
| Name | oriT_pBb144S4c  |
| Organism | Bradyrhizobium barranii subsp. barranii strain 144S4 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP086139 (67691..67728 [-], 38 nt) |
| oriT length | 38 nt |
| IRs (inverted repeats) | 18..24, 29..35 (ACGTCGC..GCGACGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 38 nt
>oriT_pBb144S4c
TCCAAGGGCGCAGTAATACGTCGCTGACGCGACGTCCT
TCCAAGGGCGCAGTAATACGTCGCTGACGCGACGTCCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 11593 | GenBank | WP_208089689 |
| Name | traA_J4G43_RS54775_pBb144S4c |
UniProt ID | _ |
| Length | 1102 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 1102 a.a. Molecular weight: 122907.19 Da Isoelectric Point: 10.3107
>WP_208089689.1 Ti-type conjugative transfer relaxase TraA [Bradyrhizobium barranii]
MAITHFTPQLIGRGDGRSAVLAAAYRHCAKMEFEAEGRTVDYSNKRGMIHEEFLVPADAPAWLRTMIADR
SVAGASEAFWNKVEAFEKRADAQFAKEFIIALPVELTSEQNIALMRQFVVEQVLSRGQVADWVNHDEPGN
PHVHMMTTLRPLTEDGFGPKRVAVIGEDGQPLRMKSGKIAYRLWAGDKQEFLEQRNGWLDLQNQHLALNG
HEIRVDGRSYAERGIDVVPTTHIGVAAKAIQRRAEREGRDPNLERLRVFNENRAETLRRIQRRPEIVLDM
ISREKSVFDERDVGKLLHRYVDDAATFQHLMARVLQSPDVLQLEGEQVDFATGARAPAKYTTRELIRLEA
EMVRRAVHLSGSGAFPVKPSVLAAMSARHANLSAEQRAAIAHLASGIRIAAVVGRAGAGKTTMMRAAREV
WEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWKSGRDGLDDRTVFVLDEAGMVASRQMALFVE
TASKAGAKLVLVGDPEQLQPIEAGAAFRAIVERIGYAELETIYRQRQQWMRDASLDLARGRTAQALSAYR
QQGRVFGSELKAQAIDNLIADWNRDYDPSKSTLILGHLRRDIRALNEMARAKLVERGLLEQGHAFRTEDG
ERRFAPGDQIVFLKNEGSLGVKNGMIGKVVEAGTARLVAEIGEGECRCRVEVDQRFYRNIDHGYATTVHK
AQGATVDRVKVLATLSLDKHLAYVALTRHREDVALYYGRRSFQKAGGLIPILSQRRAKETTLDYERGALY
RAALRFAANRGLHVVRVARTLVNDRLRWTVRQKQRLAEVARRLRALAEKLGLVDGRKPIISTAHKEAKPM
IAGVTTFPKSLIDTVEDRILADPAIKKQWEDVSIRFRLVFADPERAFRATNFDAMLKDAAAASSTIARLA
SSPESFGALRGKTGLMASKADKQERQRAEANVSALKRDIERYVRLRAEAEHKHEAEERAVRHRVAIDIPA
LSRDARRVLERVRDAIDRNDLPSALEFALADRMVKAEIDGFNKAVAERFGDRTFLSNAAREPNGQPFEKA
AAGMDPARREQLKEAWPAMRAAQQLAAGERTAQALKQAEGQRLTQSQGQTLK
MAITHFTPQLIGRGDGRSAVLAAAYRHCAKMEFEAEGRTVDYSNKRGMIHEEFLVPADAPAWLRTMIADR
SVAGASEAFWNKVEAFEKRADAQFAKEFIIALPVELTSEQNIALMRQFVVEQVLSRGQVADWVNHDEPGN
PHVHMMTTLRPLTEDGFGPKRVAVIGEDGQPLRMKSGKIAYRLWAGDKQEFLEQRNGWLDLQNQHLALNG
HEIRVDGRSYAERGIDVVPTTHIGVAAKAIQRRAEREGRDPNLERLRVFNENRAETLRRIQRRPEIVLDM
ISREKSVFDERDVGKLLHRYVDDAATFQHLMARVLQSPDVLQLEGEQVDFATGARAPAKYTTRELIRLEA
EMVRRAVHLSGSGAFPVKPSVLAAMSARHANLSAEQRAAIAHLASGIRIAAVVGRAGAGKTTMMRAAREV
WEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWKSGRDGLDDRTVFVLDEAGMVASRQMALFVE
TASKAGAKLVLVGDPEQLQPIEAGAAFRAIVERIGYAELETIYRQRQQWMRDASLDLARGRTAQALSAYR
QQGRVFGSELKAQAIDNLIADWNRDYDPSKSTLILGHLRRDIRALNEMARAKLVERGLLEQGHAFRTEDG
ERRFAPGDQIVFLKNEGSLGVKNGMIGKVVEAGTARLVAEIGEGECRCRVEVDQRFYRNIDHGYATTVHK
AQGATVDRVKVLATLSLDKHLAYVALTRHREDVALYYGRRSFQKAGGLIPILSQRRAKETTLDYERGALY
RAALRFAANRGLHVVRVARTLVNDRLRWTVRQKQRLAEVARRLRALAEKLGLVDGRKPIISTAHKEAKPM
IAGVTTFPKSLIDTVEDRILADPAIKKQWEDVSIRFRLVFADPERAFRATNFDAMLKDAAAASSTIARLA
SSPESFGALRGKTGLMASKADKQERQRAEANVSALKRDIERYVRLRAEAEHKHEAEERAVRHRVAIDIPA
LSRDARRVLERVRDAIDRNDLPSALEFALADRMVKAEIDGFNKAVAERFGDRTFLSNAAREPNGQPFEKA
AAGMDPARREQLKEAWPAMRAAQQLAAGERTAQALKQAEGQRLTQSQGQTLK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 13569 | GenBank | WP_208089668 |
| Name | t4cp2_J4G43_RS54700_pBb144S4c |
UniProt ID | _ |
| Length | 817 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 817 a.a. Molecular weight: 91320.88 Da Isoelectric Point: 5.8400
>WP_208089668.1 conjugal transfer protein TrbE [Bradyrhizobium barranii]
MVALRTFRHSGPSFADLVPYAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNGVSRQINTILARLG
SGWMIQVEAVRVPTTDYPVRQDCYFPDPVTRAIDDERRSRFEQERGHFESRHAIILSWRPPERRRAGLAR
YIYSDAESRSASYADTAIESFRTSVREVEQYLASVLSIRRIETREVEERDGTRMARYDELFQFIRFCITG
ENHPIRLPDIPMYLDWLATAELQHGLSPMVENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMF
LDDQDARQKLERTRKKWQQKVRPFIDQLFQTQSRSIDQDAAAMVAETEDAIAQASSQLVAYGYYTPVIVL
FDESSARLQEKAEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIREPLINTRNLADLIPLNSVWS
GNPTAPCPFYPPSSPPLMQVASGSTPFRLNLHVDDVGHTLVFGPTGSGKSTLLALIAAQFRRYAGAQIFA
FDKGRSMLPLTLAAGGDHYEIGGDDADGAAALAFCPLSDLSTDNDRAWAAEWVETLVAVQGVLITPDHRN
AISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAERDGLQLGSFQTFEIEQLMNMG
ERNLVPVLTYLFRRIEKRLTGSPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAER
SGIIDVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIVAAASPKREYYVASPEGRRLFNMALGP
VALSFVGASGKEDLKRILALKAAEANWPVHWLKERGIGHAETLLADL
MVALRTFRHSGPSFADLVPYAGLVANGIVLLKDGSLMAGWYFAGPDSESSTDAERNGVSRQINTILARLG
SGWMIQVEAVRVPTTDYPVRQDCYFPDPVTRAIDDERRSRFEQERGHFESRHAIILSWRPPERRRAGLAR
YIYSDAESRSASYADTAIESFRTSVREVEQYLASVLSIRRIETREVEERDGTRMARYDELFQFIRFCITG
ENHPIRLPDIPMYLDWLATAELQHGLSPMVENRFLGVVAIDGFPAESWPGILNSLDLMPLTYRWSSRFMF
LDDQDARQKLERTRKKWQQKVRPFIDQLFQTQSRSIDQDAAAMVAETEDAIAQASSQLVAYGYYTPVIVL
FDESSARLQEKAEAVRRLIQAEGFGARIETLNATEAFLGSLPGNWYANIREPLINTRNLADLIPLNSVWS
GNPTAPCPFYPPSSPPLMQVASGSTPFRLNLHVDDVGHTLVFGPTGSGKSTLLALIAAQFRRYAGAQIFA
FDKGRSMLPLTLAAGGDHYEIGGDDADGAAALAFCPLSDLSTDNDRAWAAEWVETLVAVQGVLITPDHRN
AISRQIGLMAEARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAERDGLQLGSFQTFEIEQLMNMG
ERNLVPVLTYLFRRIEKRLTGSPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVLLATQSISDAER
SGIIDVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIVAAASPKREYYVASPEGRRLFNMALGP
VALSFVGASGKEDLKRILALKAAEANWPVHWLKERGIGHAETLLADL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 18675 | GenBank | NZ_CP086139 |
| Plasmid name | pBb144S4c | Incompatibility group | - |
| Plasmid size | 140264 bp | Coordinate of oriT [Strand] | 67691..67728 [-] |
| Host baterium | Bradyrhizobium barranii subsp. barranii strain 144S4 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |