Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118194
• Name: oriT_pAMI7
• Organism: Paracoccus aminophilus JCM 7686
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_014832 (17927..17949 [+], 23 nt)
• oriT length: 23 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 23 nt

>oriT_pAMI7
GAAGTTTGCATAAGTGCGCCCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_G7C87_RS00080_pAMI7

• ID: 11557
• GenBank: WP_013496762
• Name: mobQ_G7C87_RS00080_pAMI7
• UniProt ID: E7BLE6
• Length: 479 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 479 a.a.
• Molecular weight: 51522.83 Da
• Isoelectric Point: 5.7581

>WP_013496762.1 MobQ family relaxase [Paracoccus aminophilus]
MASYHLSVKTVKRSAGRSATAAAAYRSGSVITCEREGRVHDYSAKRGVQDCFILAPEGAPDWAQERAALW
NAAEARENRSNSVTAREWELALPSELTDADRVALARDFAQALVARYGVVADVAVHAPHAEGDQRNHHVHI
LTTTRVMGSEGLGAKTRILDAAKTGGVEIEAMREVWAGLQNRALELAGTGERVDHRSLEAQREAALARGD
DLAAEGLDRAPEVKLGPAVNAMERRAQREAAAEGRDYVPVTVRGAAVYSARKARALVAELRERVEELREA
YALAREQGEGRIPAGLAALRALRAKSVAAEVEAGQVAGPGDIKMRLAGILQRDQGGAGKAVGQPSVPEPA
IEARLPEVLGRRAVEEEVAPVARRNPRLIGALAQIAEGVVRREQLGFSSPAQARAFFDDLRESYGGNVLG
QVASGDDHALVADFPDAELRRQVAIGMVVLGRSYGEIEREDLREVGPEIAREQDDGWEL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-235)

Protein structure

• AlphaFold DB: E7BLE6

T4CP

t4cp2_G7C87_RS00090_pAMI7

• ID: 13514
• GenBank: WP_013496764
• Name: t4cp2_G7C87_RS00090_pAMI7
• UniProt ID: _
• Length: 580 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 580 a.a.
• Molecular weight: 63103.51 Da
• Isoelectric Point: 7.3633

>WP_013496764.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus aminophilus]
MRGLGRLYRIIATTLGLVIGVPWLIGTFLFFLACSLAGGFLLFSMLRGLFAGTEMLSDLPSTALGVLGFA
LCLIPALGLGLLRWSDYTGISLGFLRRGDSHGSARLSTRKERAALQRGDGLLIGRDAESGRLLRYDGPAH
LITLAPTRAGKGVGTIIPNLLTAKRSVLVIDPKGENARITVRARSGLGPVHVFDPFGVTGLPTAACNPLD
RLQRGSPDLGEDAAALAEALVMDPPGQVSEAHWNEEAKALLAGLILFAVCHEEAGRRTLASVREYLTLPP
ERLRALLELMQESEAAHGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRITAALARSDLDFADLRH
DIISVFLVLPPNRLDTHSRWLRLMVAQALQDIARDAERPQERHRLPETATEALSGPEAVSEPSGGPERAR
TASSGPVLFLLDEFAALGRLEPVERAMGLMAGYGIQLWPILQDLSQLKAIYGTRAGTFIANAGVQQVFGV
NDFETAEWLSRMIGKETTSYQSHSQRHGSDDPLTTTTNLTGRDLLTPDEILQMPAHLQLLRIQGQPVTLA
RKLRYYVDPEFKTLFDPDRS

Protein domains

Predicted by InterproScan.

• Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf) (424-572)

• Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf) (128-391)

Protein structure

No available structure.

Host bacterium

• ID: 18627
• GenBank: NC_014832
• Plasmid name: pAMI7
• Incompatibility group: -
• Plasmid size: 20542 bp
• Coordinate of oriT [Strand]: 17927..17949 [+]
• Host baterium: Paracoccus aminophilus JCM 7686

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -