Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118192
• Name: oriT_Xtc-CFBP2541-G1-Mol002
• Organism: Xanthomonas translucens pv. cerealis strain CFBP 2541
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CM003053 (235601..235711 [-], 111 nt)
• oriT length: 111 nt
• IRs (inverted repeats): 73..78, 81..86 (ACCGGC..GCCGGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 111 nt

>oriT_Xtc-CFBP2541-G1-Mol002
CCGGCCCGGCCTCGCAGAGCAGGATTCCCTTTGAGCACCGCAGGTGCGAATAAGGGACAGTGAAGATAGATGACCGGCTCGCCGGTTAGCTAACTTCACCTACCCTGCCCG

oriT secondary structure

Predicted by RNAfold.

T4CP

tcpA_XTCCFBP2541_RS18620_Xtc-CFBP2541-G1-Mol002

• ID: 13512
• GenBank: WP_039009999
• Name: tcpA_XTCCFBP2541_RS18620_Xtc-CFBP2541-G1-Mol002
• UniProt ID: _
• Length: 785 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 785 a.a.
• Molecular weight: 84466.03 Da
• Isoelectric Point: 8.5727

>WP_039009999.1 DNA translocase FtsK [Xanthomonas translucens]
MAKQVPERGKSQGANAAARKQAAAANPRRQKLWRDLALIAIAPLLLYLLASLATYSATDPGWSHTGNVVA
PVHNMGGKFGAWIADVLLQLFGYVAFLLPVVIGAISWIALFGMDSDGDGEADLGPALRLVGIVGFLIAGT
GLLHLRLFSGDVAGAGGILGKLVGSSLTAGFGALGSNLFVLVLLLVSITLATGLSWFVVMERIGRAMMTL
PTLARRGSQQANEWQQTRAMREEREEVRKVDAVQRAKREPVRIEPPPAPVVEKSERAKREQQIPLFHGTG
GDQSGIPPLALLDDPKPQTKGYSEETLETLSRQIEFKLKDFRIEAQVVGAYPGPVITRFEIEPAPGIKVS
QISSLDKDIARGLSVKSVRVVDVIPGKSVVGLEIPNVSREMIYLSELLRSKEYDKSPSPLTLALGKDIAG
RPTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLYKASAKELRMLMIDPKMLELSVYQGIPHLLAPVVT
DMKEAANGLRWCVAEMERRYKLMSTVGVRNLAGFNKKVKDAQDAGQPMMDPLFKPNPDLAEAPRPLDTLP
FIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI
DSRTILDQSGAETLLGHGDMLYLPPGTAMPDRVHGAFVSDEEVHRVVEHLKASGPADYIEGVLDEVQTMG
DGTVVGATGLPESSGGGGDESDPLYDEALRIVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSPP
EHNGDRSVLAPPPPK

Protein domains

Predicted by InterproScan.

• FtsK alpha domain (FtsK_alpha) (286-386)

• Ftsk gamma domain (FtsK_gamma) (720-780)

• 4TM region of DNA translocase FtsK/SpoIIIE (FtsK_4TM) (30-204)

• FtsK/SpoIIIE family (FtsK_SpoIIIE) (394-607)

Protein structure

No available structure.

Host bacterium

• ID: 18625
• GenBank: NZ_CM003053
• Plasmid name: Xtc-CFBP2541-G1-Mol002
• Incompatibility group: -
• Plasmid size: 413839 bp
• Coordinate of oriT [Strand]: 235601..235711 [-]
• Host baterium: Xanthomonas translucens pv. cerealis strain CFBP 2541

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA7