Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   118151
Name   oriT_FDAARGOS_632|unnamed1 in_silico
Organism   Aeromonas veronii strain FDAARGOS_632
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP044061 (1272..1300 [+], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..9, 13..20  (GACTTTAC..GTAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_FDAARGOS_632|unnamed1
CGACTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11531 GenBank   WP_150390606
Name   mobV_FOB40_RS21035_FDAARGOS_632|unnamed1 insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 37445.90 Da        Isoelectric Point: 10.4710

>WP_150390606.1 MobV family relaxase [Aeromonas veronii]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINADSGRKADFYQSSMDWLAEKYGRENILVSSIHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPAIREEDLKPQSEQG
PGLLGKIGLRPMVETPLGVAERLNAKFAKAFKVVAEKASESDSQRGAAVRARMALADTQKQLQALQEPFK
GLSKDQVAEVLKQAVAMQQDNQRRQQEQDLARKLEAEIRRKLGPQQGANPSRGFGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   18584 GenBank   NZ_CP044061
Plasmid name   FDAARGOS_632|unnamed1 Incompatibility group   -
Plasmid size   2809 bp Coordinate of oriT [Strand]   1272..1300 [+]
Host baterium   Aeromonas veronii strain FDAARGOS_632

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -