Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 118073
• Name: oriT_pAH06-06-1
• Organism: Aeromonas hydrophila strain AL06-06 isolate Goldfish
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP010948 (37..65 [-], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..9, 13..20 (GACTTTAC..GTAAAGTC)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_pAH06-06-1
CGACTTTACGAAGTAAAGTCTAGTGAGTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_RY45_RS22315_pAH06-06-1

• ID: 11466
• GenBank: WP_044801260
• Name: mobV_RY45_RS22315_pAH06-06-1
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 37603.11 Da
• Isoelectric Point: 10.3961

>WP_044801260.1 MULTISPECIES: MobV family relaxase [Aeromonas]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINADSGRKTDFYQSSMDWLAEKYGRENILVSSIHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPEIREEDLKPQSEQG
PGLLGKIGLRPMIETPLGVADRLNAKFAKAFKVVAEKASESDSQRGAAVRARMALADTQKQLQALQEPFK
GLSKEQVAEVLKQAVAIQQDNQRRQQEQDLARKLEAEIRRKMAPEQGPKPSRGFGR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 18506
• GenBank: NZ_CP010948
• Plasmid name: pAH06-06-1
• Incompatibility group: -
• Plasmid size: 2838 bp
• Coordinate of oriT [Strand]: 37..65 [-]
• Host baterium: Aeromonas hydrophila strain AL06-06 isolate Goldfish

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -