Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118032 |
| Name | oriT_TSDC17.2-1.1|78  |
| Organism | Parabacteroides distasonis strain Parabacteroides distasonis TSDC17.2-1.1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_OY725823 (149764..149988 [-], 225 nt) |
| oriT length | 225 nt |
| IRs (inverted repeats) | 182..187, 201..206 (AACTAC..GTAGTT) 167..173, 178..184 (GTTATAG..CTATAAC) 143..149, 162..168 (ACCGAAA..TTTCGGT) 2..7, 11..16 (CCGTAT..ATACGG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 225 nt
>oriT_TSDC17.2-1.1|78
TCCGTATGGAATACGGCAGGGACTTATATATCCGTGATGCTTCGCAGACCTACAGCGGATGCAAGGATTTGAACGAATACTTACAGAAACAGACTGAAAGAAACAGGCAAGTCCGGTCTGCAAAGGAAACGCACAGCCGACCACCGAAAAAGAAAAACGGCTTTCGGTTATAGCCCACTATAACTACACGCTTCGCTTTCGTAGTTGTGGGCTCTCCCGAGGGGA
TCCGTATGGAATACGGCAGGGACTTATATATCCGTGATGCTTCGCAGACCTACAGCGGATGCAAGGATTTGAACGAATACTTACAGAAACAGACTGAAAGAAACAGGCAAGTCCGGTCTGCAAAGGAAACGCACAGCCGACCACCGAAAAAGAAAAACGGCTTTCGGTTATAGCCCACTATAACTACACGCTTCGCTTTCGTAGTTGTGGGCTCTCCCGAGGGGA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 18465 | GenBank | NZ_OY725823 |
| Plasmid name | TSDC17.2-1.1|78 | Incompatibility group | - |
| Plasmid size | 237076 bp | Coordinate of oriT [Strand] | 149764..149988 [-] |
| Host baterium | Parabacteroides distasonis strain Parabacteroides distasonis TSDC17.2-1.1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA11 |