Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 118015 |
| Name | oriT_pCP118-67k  |
| Organism | Clostridium perfringens E strain CP118 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP025228 (11435..11582 [+], 148 nt) |
| oriT length | 148 nt |
| IRs (inverted repeats) | 131..136, 140..145 (ATACAT..ATGTAT) 117..123, 135..141 (ATTATAT..ATATAAT) 119..125, 127..133 (TATATAT..ATATATA) 121..126, 128..133 (TATATA..TATATA) 112..118, 120..126 (TATATAT..ATATATA) 112..117, 119..124 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 148 nt
>oriT_pCP118-67k
AAGGAACTATACAGGGAACTTTAAAAATTTAAATTAATATAAAAGTTCCCTGTATAAAAATAAGTAATTAAAAGCTATATAGTATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATAATATATACATATAATGTATTGG
AAGGAACTATACAGGGAACTTTAAAAATTTAAATTAATATAAAAGTTCCCTGTATAAAAATAAGTAATTAAAAGCTATATAGTATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATAATATATACATATAATGTATTGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 13354 | GenBank | WP_013942321 |
| Name | tcpA_OQH79_RS15675_pCP118-67k |
UniProt ID | _ |
| Length | 527 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 527 a.a. Molecular weight: 60283.46 Da Isoelectric Point: 6.1206
>WP_013942321.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEIENGANAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIVARIKSDYFL
VDTKFYFKTIYFSTFIAPLFYMVIVSFIKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPEEILWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVNAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKASLDLNKEKLIDNNLMNNVNEKFEIKE
VKYMDSNIANEDDSKFENFEEQNKTENLKLTINDDYE
MSSDWEKKVNQEIENGANAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIVARIKSDYFL
VDTKFYFKTIYFSTFIAPLFYMVIVSFIKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPEEILWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVNAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKASLDLNKEKLIDNNLMNNVNEKFEIKE
VKYMDSNIANEDDSKFENFEEQNKTENLKLTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 18448 | GenBank | NZ_AP025228 |
| Plasmid name | pCP118-67k | Incompatibility group | - |
| Plasmid size | 67488 bp | Coordinate of oriT [Strand] | 11435..11582 [+] |
| Host baterium | Clostridium perfringens E strain CP118 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | cna, cpe, iap, ibp |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |