Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117842
• Name: oriT_pWH39
• Organism: Staphylococcus aureus strain WH39
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP060492 (9256..9353 [+], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): 30..37, 39..46 (TTGGGGAT..ATCCCCAA) 2..10, 12..20 (ATTTTTTCG..CGAAAAAAT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_pWH39
TATTTTTTCGACGAAAAAATCCAAGGGGCTTGGGGATTATCCCCAACAAGCAGGCGTCGCTACCACGAGAATGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_H8N04_RS14540_pWH39

• ID: 11335
• GenBank: WP_001837150
• Name: Relaxase_H8N04_RS14540_pWH39
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 38790.65 Da
• Isoelectric Point: 7.9170

>WP_001837150.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQAFKPDEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRNFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNMDELKTHLSQYSIEIERVTPKSI
TYRHLAEDKKVRGRRLGENYNKGGIEDGFERQIQRRQQERDSEHDYQPKRRTSNRDESTERDTSITQSDW
DRFAKDTNELERSRKAAESARLAHEKARRDREARIQAERETRTIINNDRDHGYEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 18275
• GenBank: NZ_CP060492
• Plasmid name: pWH39
• Incompatibility group: -
• Plasmid size: 10854 bp
• Coordinate of oriT [Strand]: 9256..9353 [+]
• Host baterium: Staphylococcus aureus strain WH39

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -