Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117838
• Name: oriT_pPTDrAP2c
• Organism: Staphylococcus aureus strain PTDrAP2
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP029170 (1694..1712 [+], 19 nt)
• oriT length: 19 nt
• IRs (inverted repeats): _
• Location of nic site: 12..13
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 19 nt

>oriT_pPTDrAP2c
CGCATAAGTGCGCCCTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_Pre_DD562_RS00060_pPTDrAP2c

• ID: 11333
• GenBank: WP_109028160
• Name: Mob_Pre_DD562_RS00060_pPTDrAP2c
• UniProt ID: _
• Length: 307 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 307 a.a.
• Molecular weight: 36986.50 Da
• Isoelectric Point: 9.5156

>WP_109028160.1 protein rep [Staphylococcus aureus]
MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTLEKQKLYKANSCKNRFCPVCAWRKAR
KDALGLSLMMQYIKQEENKEFIFLTLTTPNVMSDELENEIKHYNNSFRKLIKRKKVDSVIKGYVRKLEVT
YNKKRDDYNPHFHVLIAVNKSYFKDTKSYISQKEWLNLWRDVTGISEITQVQVQKIRQNNNKELYEMAKY
SGKDSDYLINQKVFDAFYKSLKGKQVLVYSGLFKEAKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYL
ASELYDLTEQEKREINHKMIDEIEEEQ

Protein domains

Predicted by InterproScan.

• Replication protein (Rep_1) (47-278)

Protein structure

No available structure.

Host bacterium

• ID: 18271
• GenBank: NZ_CP029170
• Plasmid name: pPTDrAP2c
• Incompatibility group: -
• Plasmid size: 3050 bp
• Coordinate of oriT [Strand]: 1694..1712 [+]
• Host baterium: Staphylococcus aureus strain PTDrAP2

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -