Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117827
• Name: oriT_LGM|unnamed2
• Organism: Streptococcus alactolyticus strain LGM
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP114885 (4404..4444 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_LGM|unnamed2
CACATTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_O6R09_RS09230_LGM|unnamed2

• ID: 11327
• GenBank: WP_269725884
• Name: mobV_O6R09_RS09230_LGM|unnamed2
• UniProt ID: _
• Length: 498 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 498 a.a.
• Molecular weight: 57954.39 Da
• Isoelectric Point: 5.8017

>WP_269725884.1 MobV family relaxase [Streptococcus alactolyticus]
MSYIVARMEKMKVGNLGGAYRHNERIFKNHSNKDIDPNRSHLNYELTDRDRSVSYEKQIKNYVNETKISK
RAIRKDAVLCDEWVITSDKTFFEKLDQEKTRDFFETAKNYFAENYGEENIAYASVHLDESTPHMHMGVVP
FENGKLSSKAMFDREELKKIQDELPKYMNEHGFDLQRGELNSEAKHKTVAEFKQDMAVKELDEKLVSEYG
APVYINETTGEFVTEGEYQENYKDFKETFGEYNVTEDDFKDFLDSDDIPLRKVTVQEKMDWVKQHYQQAL
NKLESSQKLSEARISNLDQKIEEKTKELSKIDLEASQKLSELSELEEQVNILEPQKNSLEAKIEGLRNEI
EQLGSISDSELDSIRPKKGILGSKVELSPKQWSDFKGSYYKARNEAREMKQLAKMYAQKNQALANGDRFQ
NSLNKAKTEVKDSQIISLQNALKDKDKTISVLEQKNKKLLEAAKQYMPQKLFQSLLEELQMIKPIVKVVR
TVKSLFRD

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 18260
• GenBank: NZ_CP114885
• Plasmid name: LGM|unnamed2
• Incompatibility group: -
• Plasmid size: 4565 bp
• Coordinate of oriT [Strand]: 4404..4444 [+]
• Host baterium: Streptococcus alactolyticus strain LGM

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -