Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 117826 |
| Name | oriT_UMH7|unnamed5  |
| Organism | Serratia marcescens strain UMH7 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP018922 (3819..5524 [-], 1706 nt) |
| oriT length | 1706 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 1706 nt
>oriT_UMH7|unnamed5
GCCGTATGAATGACATTTATTTCCGCCCAATCCATCGCAATCAATATTTTGAGGAAATGAAAGCATGATAAAGAAACTTAAAGTAATCATGTTGACGGCAATAGTTACCGGATGTTCATCGCCACCGCCTCCCGTTCCTGTAGAGTGGGATAAAGCCGCAGAGCCATTAAATACCAGTTTACCGCAATGGAGGGACAATAACGTTATAGTCCCTTCCCCGACAGTTAACGGTAAATGGACATCATCAATCAGCGCACAAAGTTTCTACGATACAATATGGACTCCAGCAGTATTTTACGCAGTCGCTCATTCAACACGGATTGTCGTCACTGCACAATCCGGTACTGATTTCTTTAATGCCAAAAACTGGCTTCGCCAGAATGGCGCAAAAGGAGTTATTGAATATCAGCCCGTCTTTAATTGTCTGACGTGCAGAGAAACCACCATTTATTTCTCTCGCTAATCCATTTAAGCAATACAATCTAATAAGGATTTACCATGAAAAAAACCGTTATCGCGGCGGCTGTATTATGCCTGACCGCAGGAACGCCGATTTATTCATTTGCCGCTGACCCGTGCGAAGTTGTTCTTTGCATGTACGGAAAAGCGACGGGTAATAGTGGCGGGAGTGAATGCAGTTCAGCAGAACGCGCATTTTTTAAAATTAACGCCTTTAAAAAACACCATCGTTTTAATCCGGGTAAAACATTCGATATGCGAAAAGAATTTTTAGGCGAATGTAAAGCCGCAGACCCTGAATCAATAAGCAAAATCCTTTCAAAATTTGGTAGAGTGAAAGGATAACTGACATATCCATTTTGATATGAGAGGTTCGGAATGATAAATGAAGATTTATTCATTAAGAATATACACTCAAAAAATCAGGACAGAATATCTGTAGCCCTGGTATATGACACGTTATCAAAAGAAGCCCACAGAGGTTGTGGGCTGTATTACGAAATATACGAAAGCTGTTTTATCGGTCTTTTGCGCGATCATCTTTCAGAACTTAATGAAGCCGACGCAAATAAATTAATGAGGTACGCAGAAAGTAAAGGCACGAAAATTGATGATGTGTCCTACAGTGAAGCACTGGAAGCTGAAAGGGAGTGCAGAGCTGAAATATACCGCGAGCAGATGTAATCACACAAAACAAAAGTGTATTGTACAATACGCAGCCTAACAGGCGGCGGGATTTTAAGGCTTCATTATTTTTGGCTTCAATTTCGAAGAAATTGTTAAGACGAAAAATAATGAAGTGGTACGCGGAAAGAAAATTCAATTTCGGAGAAATTGCTAATTTTCAGGAACCGCGCCCACCTGCGAACATTCGCCCACAGCGAATTGAGCAGGCCGGGGGGAGCCGCAAAAATTTTGCCGCCCCAGCGAGCAAAAAGGCACGCCCACGTGCCGTTTTTTGTGGGGGGCTTGCCCCGCACACCGTCGCAGCCAGGTAATATAACCCGCCCCAGCGGGGGATATTACCGATTAGGCGCGACCAACCCCTTTAAAGCAGCGTTCCGATTTTTTCGAGCTTGCGAGGAAAAATAGGCTAAACGCAGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGCAAGACGGTGTGCCGCCTTTGACCTTGGGGGTTTTGGCTCGGCGTCCAGCCGGGACATTACCCCCATGTGTCATGCAGTGAGGGCGTCCAGCCCGAACGTAATGGCACACGCCGT
GCCGTATGAATGACATTTATTTCCGCCCAATCCATCGCAATCAATATTTTGAGGAAATGAAAGCATGATAAAGAAACTTAAAGTAATCATGTTGACGGCAATAGTTACCGGATGTTCATCGCCACCGCCTCCCGTTCCTGTAGAGTGGGATAAAGCCGCAGAGCCATTAAATACCAGTTTACCGCAATGGAGGGACAATAACGTTATAGTCCCTTCCCCGACAGTTAACGGTAAATGGACATCATCAATCAGCGCACAAAGTTTCTACGATACAATATGGACTCCAGCAGTATTTTACGCAGTCGCTCATTCAACACGGATTGTCGTCACTGCACAATCCGGTACTGATTTCTTTAATGCCAAAAACTGGCTTCGCCAGAATGGCGCAAAAGGAGTTATTGAATATCAGCCCGTCTTTAATTGTCTGACGTGCAGAGAAACCACCATTTATTTCTCTCGCTAATCCATTTAAGCAATACAATCTAATAAGGATTTACCATGAAAAAAACCGTTATCGCGGCGGCTGTATTATGCCTGACCGCAGGAACGCCGATTTATTCATTTGCCGCTGACCCGTGCGAAGTTGTTCTTTGCATGTACGGAAAAGCGACGGGTAATAGTGGCGGGAGTGAATGCAGTTCAGCAGAACGCGCATTTTTTAAAATTAACGCCTTTAAAAAACACCATCGTTTTAATCCGGGTAAAACATTCGATATGCGAAAAGAATTTTTAGGCGAATGTAAAGCCGCAGACCCTGAATCAATAAGCAAAATCCTTTCAAAATTTGGTAGAGTGAAAGGATAACTGACATATCCATTTTGATATGAGAGGTTCGGAATGATAAATGAAGATTTATTCATTAAGAATATACACTCAAAAAATCAGGACAGAATATCTGTAGCCCTGGTATATGACACGTTATCAAAAGAAGCCCACAGAGGTTGTGGGCTGTATTACGAAATATACGAAAGCTGTTTTATCGGTCTTTTGCGCGATCATCTTTCAGAACTTAATGAAGCCGACGCAAATAAATTAATGAGGTACGCAGAAAGTAAAGGCACGAAAATTGATGATGTGTCCTACAGTGAAGCACTGGAAGCTGAAAGGGAGTGCAGAGCTGAAATATACCGCGAGCAGATGTAATCACACAAAACAAAAGTGTATTGTACAATACGCAGCCTAACAGGCGGCGGGATTTTAAGGCTTCATTATTTTTGGCTTCAATTTCGAAGAAATTGTTAAGACGAAAAATAATGAAGTGGTACGCGGAAAGAAAATTCAATTTCGGAGAAATTGCTAATTTTCAGGAACCGCGCCCACCTGCGAACATTCGCCCACAGCGAATTGAGCAGGCCGGGGGGAGCCGCAAAAATTTTGCCGCCCCAGCGAGCAAAAAGGCACGCCCACGTGCCGTTTTTTGTGGGGGGCTTGCCCCGCACACCGTCGCAGCCAGGTAATATAACCCGCCCCAGCGGGGGATATTACCGATTAGGCGCGACCAACCCCTTTAAAGCAGCGTTCCGATTTTTTCGAGCTTGCGAGGAAAAATAGGCTAAACGCAGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGCAAGACGGTGTGCCGCCTTTGACCTTGGGGGTTTTGGCTCGGCGTCCAGCCGGGACATTACCCCCATGTGTCATGCAGTGAGGGCGTCCAGCCCGAACGTAATGGCACACGCCGT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 13238 | GenBank | WP_079900893 |
| Name | t4cp2_BVG94_RS25745_UMH7|unnamed5 |
UniProt ID | _ |
| Length | 912 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 912 a.a. Molecular weight: 103040.99 Da Isoelectric Point: 7.4625
>WP_079900893.1 MULTISPECIES: VirB3 family type IV secretion system protein [Enterobacterales]
MAKLLKAMKRPAALWGVPMVPLLAVTGVTIIVAIWTSVALLFLLPVQFLVMKSLTRNEPMRFNLIAVWLR
AKGKPVANRLFGATTFMPVEHDDVDIKEFLDAMKLNQCATIKKYIPYSSHIHQHVVRSPKSDLYCTWELM
GTPFDCESDESLQFGTNQLHGLIRSFEGMPVTFYIHNDRNTFTDNLHKDSGNPYADEVSRLYYASVGVFR
RNRLFLTVCYRPFVSLEKAERKRMKDAQKLKELDGALLEMLEIKSTLDTALSRYGARPLGTFTEGSAVFS
SQLAFYEYLLTHQWRKVRVTRTPAYDVMGAAALFFSAESGQINHANGTQYFRGLEVKEFSEETATGMMDS
LLYAPCDYVITQSYTCMSREEAKKAIKRTRRLLMSADDDAISQRLDLDVALDLLTSGKIAYGKHHFSIMV
YSPSLESLVADTNEISNALNNIGITPVPAEISLSAAYMAQLPGNYNLRPRKGELSSQNFVELAALHNFYP
GKRDKAPWGDAMALLRTPSGDGYYINLHNTLADKDEFNEKNPASTCILGTNGSGKTMLMTFFEIMQQKYG
REDSFSPDAKTKRLTTVYLDKDRGAEMNIRALGGRYYRVISGESTGWNPFSLPATKRNINFIKQLMKILC
TRNGSTISPRDERRLSDAVNAVMNDEPQYRVYGITRMLENLPEPATKEAQENGLSIRLSQWAQGGEFGWV
FDNESDTFDISNCDNFGIDGTEFLDDASVCAPISFYLLYRITSLLDGRRLVIFMDEFWKWLRDPVFKDFA
YNKLKTIRKLNGMLVVGTQSPAEIIKDDIAPAVIEQCGTQILAANPNADRAHYVDGMKFEPEVFDVVKGL
DPQARQYVVVKNQFKRGDTKRFAARVTLDLSGIGRYTKVMSGDAPNLEIFESIYREGMQPHEWLDTYLAK
AL
MAKLLKAMKRPAALWGVPMVPLLAVTGVTIIVAIWTSVALLFLLPVQFLVMKSLTRNEPMRFNLIAVWLR
AKGKPVANRLFGATTFMPVEHDDVDIKEFLDAMKLNQCATIKKYIPYSSHIHQHVVRSPKSDLYCTWELM
GTPFDCESDESLQFGTNQLHGLIRSFEGMPVTFYIHNDRNTFTDNLHKDSGNPYADEVSRLYYASVGVFR
RNRLFLTVCYRPFVSLEKAERKRMKDAQKLKELDGALLEMLEIKSTLDTALSRYGARPLGTFTEGSAVFS
SQLAFYEYLLTHQWRKVRVTRTPAYDVMGAAALFFSAESGQINHANGTQYFRGLEVKEFSEETATGMMDS
LLYAPCDYVITQSYTCMSREEAKKAIKRTRRLLMSADDDAISQRLDLDVALDLLTSGKIAYGKHHFSIMV
YSPSLESLVADTNEISNALNNIGITPVPAEISLSAAYMAQLPGNYNLRPRKGELSSQNFVELAALHNFYP
GKRDKAPWGDAMALLRTPSGDGYYINLHNTLADKDEFNEKNPASTCILGTNGSGKTMLMTFFEIMQQKYG
REDSFSPDAKTKRLTTVYLDKDRGAEMNIRALGGRYYRVISGESTGWNPFSLPATKRNINFIKQLMKILC
TRNGSTISPRDERRLSDAVNAVMNDEPQYRVYGITRMLENLPEPATKEAQENGLSIRLSQWAQGGEFGWV
FDNESDTFDISNCDNFGIDGTEFLDDASVCAPISFYLLYRITSLLDGRRLVIFMDEFWKWLRDPVFKDFA
YNKLKTIRKLNGMLVVGTQSPAEIIKDDIAPAVIEQCGTQILAANPNADRAHYVDGMKFEPEVFDVVKGL
DPQARQYVVVKNQFKRGDTKRFAARVTLDLSGIGRYTKVMSGDAPNLEIFESIYREGMQPHEWLDTYLAK
AL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 5457..15395
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG94_RS25670 (BVG94_25695) | 593..1072 | - | 480 | WP_233504033 | thermonuclease family protein | - |
| BVG94_RS25675 (BVG94_25700) | 1100..1854 | - | 755 | Protein_2 | MobC family replication-relaxation protein | - |
| BVG94_RS25680 (BVG94_25705) | 1863..3602 | - | 1740 | Protein_3 | type IV secretion system DNA-binding domain-containing protein | - |
| BVG94_RS25695 (BVG94_25720) | 4382..4687 | - | 306 | WP_009309963 | hypothetical protein | - |
| BVG94_RS25700 (BVG94_25725) | 4721..5026 | - | 306 | WP_012457118 | hypothetical protein | - |
| BVG94_RS25705 (BVG94_25730) | 5062..5460 | - | 399 | WP_079900894 | cag pathogenicity island Cag12 family protein | - |
| BVG94_RS25710 (BVG94_25735) | 5457..6482 | - | 1026 | WP_000125558 | P-type DNA transfer ATPase VirB11 | virB11 |
| BVG94_RS25715 (BVG94_25740) | 6472..7740 | - | 1269 | WP_041912104 | VirB10/TraB/TrbI family type IV secretion system protein | virB10 |
| BVG94_RS25720 (BVG94_25745) | 7784..8692 | - | 909 | WP_089197859 | P-type conjugative transfer protein VirB9 | virB9 |
| BVG94_RS25725 (BVG94_25750) | 8689..9372 | - | 684 | WP_041912105 | type IV secretion system protein | virB8 |
| BVG94_RS25730 (BVG94_25755) | 9594..10664 | - | 1071 | WP_023213242 | type IV secretion system protein | virB6 |
| BVG94_RS25735 (BVG94_25760) | 10677..10901 | - | 225 | WP_032152566 | EexN family lipoprotein | - |
| BVG94_RS25740 (BVG94_25765) | 10913..11614 | - | 702 | WP_041912106 | type IV secretion system protein | - |
| BVG94_RS25745 (BVG94_25770) | 11632..14370 | - | 2739 | WP_079900893 | VirB3 family type IV secretion system protein | virb4 |
| BVG94_RS25750 (BVG94_25775) | 14383..14688 | - | 306 | WP_041912108 | TrbC/VirB2 family protein | virB2 |
| BVG94_RS25755 (BVG94_25780) | 14685..15395 | - | 711 | WP_004178175 | lytic transglycosylase domain-containing protein | virB1 |
| BVG94_RS25760 (BVG94_25785) | 15513..15731 | - | 219 | WP_032722781 | hypothetical protein | - |
| BVG94_RS25765 (BVG94_25790) | 15736..15951 | - | 216 | WP_004178170 | hypothetical protein | - |
| BVG94_RS25770 (BVG94_25795) | 16023..16478 | - | 456 | WP_071993787 | transcription termination/antitermination NusG family protein | - |
| BVG94_RS25775 (BVG94_25800) | 16729..17085 | + | 357 | WP_071993788 | helix-turn-helix transcriptional regulator | - |
| BVG94_RS25785 (BVG94_25810) | 17546..18247 | + | 702 | WP_261762969 | RepA family replication protein | - |
| BVG94_RS25790 (BVG94_25815) | 19108..19437 | + | 330 | WP_063443752 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BVG94_RS25795 (BVG94_25820) | 19418..19699 | + | 282 | WP_000780222 | helix-turn-helix transcriptional regulator | - |
Host bacterium
| ID | 18259 | GenBank | NZ_CP018922 |
| Plasmid name | UMH7|unnamed5 | Incompatibility group | IncFII |
| Plasmid size | 21738 bp | Coordinate of oriT [Strand] | 3819..5524 [-] |
| Host baterium | Serratia marcescens strain UMH7 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |