Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 117807 |
| Name | oriT_pXM9F202-2-tetX-90k  |
| Organism | Acinetobacter variabilis strain XM9F202-2 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP060813 (56733..56836 [-], 104 nt) |
| oriT length | 104 nt |
| IRs (inverted repeats) | 63..70, 73..80 (CACCATGC..GCATGGTG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 104 nt
>oriT_pXM9F202-2-tetX-90k
GCCCCGCAGGGCAGGATTCCCGTTGAGCGCCGCAGGTGCGAATAAGGGGAAGTGAAGAGGAACACCATGCTTGCATGGTGGGCCTACTTCACACATCCTGCCCG
GCCCCGCAGGGCAGGATTCCCGTTGAGCGCCGCAGGTGCGAATAAGGGGAAGTGAAGAGGAACACCATGCTTGCATGGTGGGCCTACTTCACACATCCTGCCCG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 18240 | GenBank | NZ_CP060813 |
| Plasmid name | pXM9F202-2-tetX-90k | Incompatibility group | - |
| Plasmid size | 90430 bp | Coordinate of oriT [Strand] | 56733..56836 [-] |
| Host baterium | Acinetobacter variabilis strain XM9F202-2 |
Cargo genes
| Drug resistance gene | lnu(G), floR, aph(3'')-Ib, aph(6)-Id, sul2, tet(X3), dfrA1, ant(3'')-Ia, aph(3')-Ia, aac(3)-IIa |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |