Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117616
• Name: oriT_pWP5-S18-ESBL-05_12
• Organism: Klebsiella quasipneumoniae strain WP5-S18-ESBL-05
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AP022154 (1362..1395 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_pWP5-S18-ESBL-05_12
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_H7R80_RS29770_pWP5-S18-ESBL-05_12

• ID: 11223
• GenBank: WP_176217771
• Name: mobV_H7R80_RS29770_pWP5-S18-ESBL-05_12
• UniProt ID: _
• Length: 322 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 322 a.a.
• Molecular weight: 36734.31 Da
• Isoelectric Point: 9.9601

>WP_176217771.1 MULTISPECIES: MobV family relaxase [Klebsiella]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAV
LAVEYVMTASPEWWNEATPRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSQAVNDGFAGTIAMASQSAQNAKRARDLQKTMDSQQKRLQSVTEPFKGLSREQ
MTHILTMAQTFQQQNHDREKQRQLEREQERQQRQKTDRGISR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 18049
• GenBank: NZ_AP022154
• Plasmid name: pWP5-S18-ESBL-05_12
• Incompatibility group: -
• Plasmid size: 2726 bp
• Coordinate of oriT [Strand]: 1362..1395 [+]
• Host baterium: Klebsiella quasipneumoniae strain WP5-S18-ESBL-05

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -