Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117604
• Name: oriT_pSTW0522-39-5
• Organism: Klebsiella quasipneumoniae strain STW0522-39
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AP022417 (1092..1125 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_pSTW0522-39-5
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_JLF46_RS27445_pSTW0522-39-5

• ID: 11219
• GenBank: WP_024227749
• Name: mobV_JLF46_RS27445_pSTW0522-39-5
• UniProt ID: _
• Length: 322 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 322 a.a.
• Molecular weight: 36712.28 Da
• Isoelectric Point: 9.9026

>WP_024227749.1 MULTISPECIES: MobV family relaxase [Klebsiella]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENHCSVSQSADEAMGKLRELLPEKRRKDAV
LCVEYVMTASPEWWDKATPRQQAEFFARSEQWLENKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSQAVNDGFAGTIAMASQSAQNAKRARDLQKTMDSQQKRLQSVTEPFKGLSREQ
MTHILTMAQTFQQQNHDREKQRQLEREQERQQRQKTDRGISR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 18037
• GenBank: NZ_AP022417
• Plasmid name: pSTW0522-39-5
• Incompatibility group: -
• Plasmid size: 3338 bp
• Coordinate of oriT [Strand]: 1092..1125 [+]
• Host baterium: Klebsiella quasipneumoniae strain STW0522-39

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -