Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   117595
Name   oriT_pWP3-S18-ESBL-03_5 in_silico
Organism   Klebsiella quasipneumoniae strain WP3-S18-ESBL-03
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP022019 (32943..33080 [+], 138 nt)
oriT length   138 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 138 nt

>oriT_pWP3-S18-ESBL-03_5
CGAATGGTCTGGCGTCCGTTGGAACCACGTGGCGAAGCCATGTGTGTTACAACGGCCATCCTGTTAAGCTCATCCGCTCTACTATCGTATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCACAAATGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11216 GenBank   WP_015060220
Name   traI_H7R87_RS29995_pWP3-S18-ESBL-03_5 insolico UniProt ID   _
Length   889 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 889 a.a.        Molecular weight: 101332.84 Da        Isoelectric Point: 9.8368

>WP_015060220.1 MULTISPECIES: TraI/MobA(P) family conjugative relaxase [Enterobacterales]
MIVKKVPNSKTKHKTGSIRDLADYIREPHNQNPDEKVLYANGRGFLCDGHAAQREEMVALAAESVRSKNP
VNHYIMSWREGEQPSPEQVEEAVSIFMDELGVKDHQAIYGLHADTDNLHLHLAINRVHPETLKVVKINNG
FDIEAAHKAIARIENAQGWQREQNGRYQVLENGELGREHIDKDKPRQPAQPKRDMENRTGEKSAERIAIE
DGAPIIKKAQTWEQLHRELAAKGMRYEKTGSGATLFVGDVGVKASSADRDASLSKLQKRLGAYQPPPQRQ
QVAQREPEPIKPDVPGWKDYITGRKAHYAEKNAAKLALDKRQEQERKQIAEQQKARRDELMRGNWKGKGE
VLNAMRSVIAAEQAAEKAALKEKHQKQREQHRQQFRPYPDLEQWQRMQKSPELAEQWRHRASEPQRIEGA
SGEPPTPRDIRAYQPEIVGQQVHYSRKEEAGAGGGVSFVDKGKSIDIHDWRNRDSTLAALQLSAQKWGSF
TVTGNDEYKAMCAKLAAEHGFKITNPELQERIQQERQRIQQERAQAMKSEQLKQFELYAEAVGAERYRVT
SIKMQADGRKQTFILDKKDGITRGFTPQEIEQRTPEMLRLQRRGENLYYTPLSDKKHHILIDDMNREKLE
RLIRDGYRPAVVLESSPGNYQAIITVPKLGTAHDKDVGNRLSDALNREYGDPKLSGAIHPHRAPGYENRK
PKHQREDGSYPEVRLLKAERRECVKALALSSQIDAEYQRQAALKAQQPERSKAKPALELAAASGSAIDAY
QRHYRDVIKRQRGGEVDLSRVDSMIAVRMRVTGHDQAAIEGAIRQCAPATRQKDEGRDWNDYAQRTARYA
YSAAGDRQAAELGKYRQQWEKLEGREPVRQQEQAKAQKIERDNSPGMSR

  Protein domains


Predicted by InterproScan.

Large polyvalent protein-associated domain 7 (LPD7)

(438-526)

Relaxase/Mobilisation nuclease domain (Relaxase)

(17-272)

RepB DNA-primase from phage plasmid (RepB_primase)

(548-806)


  Protein structure



No available structure.




Host bacterium

ID   18028 GenBank   NZ_AP022019
Plasmid name   pWP3-S18-ESBL-03_5 Incompatibility group   IncP6
Plasmid size   38203 bp Coordinate of oriT [Strand]   32943..33080 [+]
Host baterium   Klebsiella quasipneumoniae strain WP3-S18-ESBL-03

Cargo genes

Drug resistance gene   -
Virulence gene   katB
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -