Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   117577
Name   oriT_pWP3-W18-ESBL-02_9 in_silico
Organism   Klebsiella sp. WP3-W18-ESBL-02
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP021981 (1340..1373 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_pWP3-W18-ESBL-02_9
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11200 GenBank   WP_182928890
Name   mobV_H7R56_RS27530_pWP3-W18-ESBL-02_9 insolico UniProt ID   _
Length   322 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 322 a.a.        Molecular weight: 36814.45 Da        Isoelectric Point: 10.1378

>WP_182928890.1 MULTISPECIES: MobV family relaxase [unclassified Klebsiella]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCSVSESTDQAMGRVRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDSQQKRLQSVTEPFKGLSREQ
MTHILTMAQTFQQQNHDREKQRQLEREQERQQRQKTDRGISR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   18010 GenBank   NZ_AP021981
Plasmid name   pWP3-W18-ESBL-02_9 Incompatibility group   -
Plasmid size   3139 bp Coordinate of oriT [Strand]   1340..1373 [-]
Host baterium   Klebsiella sp. WP3-W18-ESBL-02

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -