Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 117443 |
| Name | oriT_pMspAR07a  |
| Organism | Mesorhizobium sp. AR07 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP080529 (208118..208149 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 17..22, 27..32 (CGTCGC..GCGACG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_pMspAR07a
GAAGGGCGCACTTATACGTCGCTTGGGCGACG
GAAGGGCGCACTTATACGTCGCTTGGGCGACG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 11107 | GenBank | WP_258599215 |
| Name | MobA_MobL_BPNPMPFG_RS42125_pMspAR07a |
UniProt ID | _ |
| Length | 128 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 128 a.a. Molecular weight: 14264.25 Da Isoelectric Point: 6.0921
>WP_258599215.1 MobA/MobL family protein [Mesorhizobium sp. AR07]
MAIYHLHAQIIGRGEGRSAVASAAYRHCARMEIEAEARVADYSNKKGLAHSEFALPEETPAWLRTLIDGR
DATGASAALWNAVEAFEKRADAQFMREMDLALPVELNRQQNIELMRAFVAEQILPRGL
MAIYHLHAQIIGRGEGRSAVASAAYRHCARMEIEAEARVADYSNKKGLAHSEFALPEETPAWLRTLIDGR
DATGASAALWNAVEAFEKRADAQFMREMDLALPVELNRQQNIELMRAFVAEQILPRGL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 12974 | GenBank | WP_258599213 |
| Name | traG_BPNPMPFG_RS42110_pMspAR07a |
UniProt ID | _ |
| Length | 637 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 637 a.a. Molecular weight: 68841.48 Da Isoelectric Point: 9.5619
>WP_258599213.1 Ti-type conjugative transfer system protein TraG [Mesorhizobium sp. AR07]
MTWKKLVLTIAPAALMIATRWGLTGIENWLASFGTSHAAYLFLGKFGLALPYATAGVVGLVFLFAAAGSA
SIRSAGLSAFLGAMLVVVIAVINEGGRLLSFTDRVAEGLLSYADPFTIGGATITLFVGVFALRVALHGNT
AFASPSPKRTIGKRAIHGDADWMTLTEAAGLFPKEGGIAVGERYRVDGDTVAASPFKASDKESWGSGGRK
SLLCFEGDFGSGHAIVFAGSGGFKTTSVTIPTALQWTGGLVVLDPSNEVAPMVAAHRKSRNRQVHVIDPG
RDGTGFNALDWIGKFGGTKEQDIAAVASWIMTDNPRIDAGRNDFFRGSAQQLVTALIADVCLSGHTPSGN
QTLRQVRTNVAEPEPKLRTRLQEIYDSSQSAFVRENVAPFINMTPETFSGIYGAASKETHWLSYENYAAL
VSGRSFATDEVAAGNTDIFINLDLKTLENHPGLARVIIGSLMNAIYNRNGDVEDRTLFLLDEVARLGFMR
ILETARDAGRKYGISLLMLFQSIGQMREAYGGRDASSKWFESASWISFAAINDPETAEYISKRCGDTTVE
VGQTSTSSRMNGTSRTRSKQLARRPLILPHEVMQMRTDEQIVFTAGNPPLRCGRAIYFRRKDMTDRVGAN
KFGPKKK
MTWKKLVLTIAPAALMIATRWGLTGIENWLASFGTSHAAYLFLGKFGLALPYATAGVVGLVFLFAAAGSA
SIRSAGLSAFLGAMLVVVIAVINEGGRLLSFTDRVAEGLLSYADPFTIGGATITLFVGVFALRVALHGNT
AFASPSPKRTIGKRAIHGDADWMTLTEAAGLFPKEGGIAVGERYRVDGDTVAASPFKASDKESWGSGGRK
SLLCFEGDFGSGHAIVFAGSGGFKTTSVTIPTALQWTGGLVVLDPSNEVAPMVAAHRKSRNRQVHVIDPG
RDGTGFNALDWIGKFGGTKEQDIAAVASWIMTDNPRIDAGRNDFFRGSAQQLVTALIADVCLSGHTPSGN
QTLRQVRTNVAEPEPKLRTRLQEIYDSSQSAFVRENVAPFINMTPETFSGIYGAASKETHWLSYENYAAL
VSGRSFATDEVAAGNTDIFINLDLKTLENHPGLARVIIGSLMNAIYNRNGDVEDRTLFLLDEVARLGFMR
ILETARDAGRKYGISLLMLFQSIGQMREAYGGRDASSKWFESASWISFAAINDPETAEYISKRCGDTTVE
VGQTSTSSRMNGTSRTRSKQLARRPLILPHEVMQMRTDEQIVFTAGNPPLRCGRAIYFRRKDMTDRVGAN
KFGPKKK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17876 | GenBank | NZ_CP080529 |
| Plasmid name | pMspAR07a | Incompatibility group | - |
| Plasmid size | 345015 bp | Coordinate of oriT [Strand] | 208118..208149 [+] |
| Host baterium | Mesorhizobium sp. AR07 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | PFL_4714 |
| Symbiosis gene | - |
| Anti-CRISPR | - |