Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   117381
Name   oriT_pAbe229-114 in_silico
Organism   Acinetobacter bereziniae strain HPC229
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CM012183 (100382..100446 [-], 65 nt)
oriT length   65 nt
IRs (inverted repeats)      25..32, 35..42  (TAACCGGC..GCCGGTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 65 nt

>oriT_pAbe229-114
CGAATAAGGGCAAGTGAAGATAGTTAACCGGCTTGCCGGTTAGCTAACTTCACTTATCTTGCCCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   11078 GenBank   WP_227549022
Name   traI_NDM229_RS00535_pAbe229-114 insolico UniProt ID   _
Length   691 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 691 a.a.        Molecular weight: 75499.44 Da        Isoelectric Point: 10.7766

>WP_227549022.1 TraI/MobA(P) family conjugative relaxase [Acinetobacter bereziniae]
MIAKRIPMNSAKKSSFAGLVKYITSSQGINERVGQVRVTNCQTEELSWAVHEVLHTQKINTRAEGDKTYH
LLISLAPGEQPSSEVLRDIEDRVCSAIGYQNHQRVSAVHNDTDCLHIHIAINKIHPERHTLHEPYRDFKT
LGDICARLELEHGLQQVNHARKKGVSECRANDMEQHAGIESLLSWVRRECLEQVQGAKSWNELHQVLHEN
GLELRERGNGLVITDQAGTMVKASTVARDLSKSKLEERLGAFENQRQQTRASLKQGKPHPRKPGVGRVGR
SPPPASKKRLRGLSTLQSIQIDSGKRYEKNPVGHKSDTTELYARFRDEQNAVRHTKAKELAAARDRRDRA
IEHAKNVAKLKRSSIKLMATPGLTKKLLYASTSKSLQEQVTSLRAEHIKAIENINTSRKARQWADWLQAK
ALDGDQDALKALRARPGVKGLQGDAVAAEGQKQPAKAAPIEQDHITKEGTVIYRAGASAIRDDGSKLQLS
RGANFDGIETALRMAAARYGEKITITGSDQFKELVAQTAAIRSLPIKFDDPALEQRRQSLQQAIEKERSN
VGRTDRGRAAGAGAGVDGLNAARGGRTTGAGRGAGVRGRTIGTGLSGRAGTATSGRVTVRSPGGTAKPGV
ARVGRKPPPESQNRLRALSKLGVVQLTHGSEVLLPRDVPGVVEHQGAKPDNGLRRDVSRSG

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(12-250)

Large polyvalent protein-associated domain 7 (LPD7)

(462-550)


  Protein structure



No available structure.




Host bacterium

ID   17814 GenBank   NZ_CM012183
Plasmid name   pAbe229-114 Incompatibility group   -
Plasmid size   114007 bp Coordinate of oriT [Strand]   100382..100446 [-]
Host baterium   Acinetobacter bereziniae strain HPC229

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   cusA/ybdE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -