Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 117167
• Name: oriT_pPspP11G3b
• Organism: Psychrobacter sp. P11G3
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CM003598 (4747..4766 [+], 20 nt)
• oriT length: 20 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 20 nt

>oriT_pPspP11G3b
GTTTGCATAAGTGCGCCCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_AK824_RS13265_pPspP11G3b

• ID: 10936
• GenBank: WP_057762722
• Name: mobQ_AK824_RS13265_pPspP11G3b
• UniProt ID: _
• Length: 558 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 558 a.a.
• Molecular weight: 64238.91 Da
• Isoelectric Point: 7.4467

>WP_057762722.1 MobQ family relaxase [Psychrobacter sp. P11G3]
MAIYHLSVKTFSRSNGQSATAAVAYRAGAKIHCEHERRDHDYSKKRDVIHSEIFLPPNAPSWANDRQQLW
NEVERAEKRKNSTVAREFEVALPNELNEQQRIALVQDFAKQIIARHGCAVDAHLHDDKGSYKSKENQHAH
IMLTTRRLEPEGFTKKTRELDEKKSGEVVYWREQWAKTANEHLREYAIEIDHRSLKDQGLEREPTIKMGV
AASALERKGVKTDRGDINREVAKYNKVLETNSNEKINDILSKQLKQATELHNKLQFIKRRLPEVKRDITE
KQPKLYQAFDDLGIPTAEPEPIRSVDNEQERERIEPVSARLDRQVSTERHTNERRRELPPVGSSESNELG
QGYNSEVRPADQTVTSTAPRGIAEPTQQPTEPIQQPKAPQATQEAVKAPTAPNKADEIAEKRLMVKDFVQ
RCKEVAQQAHRSQLDAIKAQAKPIYAEIERLKDNEPWNPFKTKAWQAELDKKVAQYNDIKSSFDDLKSQG
VTKELIQAVHADEHRRNPMAYKNISAIEDEVTAYDQEQIEVLREQRQQQLVLQRSEVERDVVDKGIDR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-218)

Protein structure

No available structure.

Host bacterium

• ID: 17600
• GenBank: NZ_CM003598
• Plasmid name: pPspP11G3b
• Incompatibility group: -
• Plasmid size: 6907 bp
• Coordinate of oriT [Strand]: 4747..4766 [+]
• Host baterium: Psychrobacter sp. P11G3

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -