Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 117061 |
| Name | oriT_pB  |
| Organism | Oceanisphaera sp. IT1-181 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP136858 (1640..1663 [-], 24 nt) |
| oriT length | 24 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | 18..19 |
| Conserved sequence flanking the nic site |
GTGCGCCCTC |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 24 nt
>oriT_pB
GAGAAACCCCTAAGTGCGCCCTCC
GAGAAACCCCTAAGTGCGCCCTCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10883 | GenBank | WP_319784506 |
| Name | MobA_MobL_R0134_RS16450_pB |
UniProt ID | _ |
| Length | 698 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 698 a.a. Molecular weight: 77793.55 Da Isoelectric Point: 8.6218
>WP_319784506.1 DNA-primase RepB domain-containing protein [Oceanisphaera sp. IT1-181]
MAIYHLTVKTGSRKNGQSAKAKSDYIQRENKYSRDKDEVVYTQSGNMPEWVEKPSEFWDASDLYERSNAT
LFREVEFALPTELTVEQQKKLAGSFADHLTGKLNLTYTLAIHAGNGDNPHCHLMISERINDGISRTPDKW
FKRYNSKEPEKGGAKKADIASRRKDWLNDTRSSWEKHANKALALAGSDARIDHRTLEEQGINRVPQIHIG
AKVIEMENRGIKTDRAEIALNVDAANQEIKQLETEIRVLNYEHNIETKKRTERGGIGNGDRAIGDSPSGI
IRPSGTVDNSPRGSEQKASGRVDELPKEISRPMDGSSERNEQSRQRGLEHDRQGEGDNRGAGSSDLVVGS
NGFTNTYSSAADRIANLIQSKPDGTRRDQLSDNSVGLVNDKTYLAVRRQITAMKCTDFEVGIRDKNGQMM
SRKWTDKELLNSVPWLKRENAKGADIYIRPSGDKNHGIILVDDVNQGQIAQMKAKGLEPATVIETSPKNY
QAWIRVSEKPLDPAIATHISKSIASHFGADANSADWRHYGRLAGFTNKKPEHTNEMGHNPWVLSHESSGK
SATNGTALVDATTKDVQNQQAVTERKTRLESALNGRTSDFPSKAIREYQNQLKTLTERYGESMDISKADY
MICTSMAKKGYDPSSIVEALEQASPELPTRKAGHELDYCQRTVKAVFAQPEVIQAVTQDQTNSRGFGR
MAIYHLTVKTGSRKNGQSAKAKSDYIQRENKYSRDKDEVVYTQSGNMPEWVEKPSEFWDASDLYERSNAT
LFREVEFALPTELTVEQQKKLAGSFADHLTGKLNLTYTLAIHAGNGDNPHCHLMISERINDGISRTPDKW
FKRYNSKEPEKGGAKKADIASRRKDWLNDTRSSWEKHANKALALAGSDARIDHRTLEEQGINRVPQIHIG
AKVIEMENRGIKTDRAEIALNVDAANQEIKQLETEIRVLNYEHNIETKKRTERGGIGNGDRAIGDSPSGI
IRPSGTVDNSPRGSEQKASGRVDELPKEISRPMDGSSERNEQSRQRGLEHDRQGEGDNRGAGSSDLVVGS
NGFTNTYSSAADRIANLIQSKPDGTRRDQLSDNSVGLVNDKTYLAVRRQITAMKCTDFEVGIRDKNGQMM
SRKWTDKELLNSVPWLKRENAKGADIYIRPSGDKNHGIILVDDVNQGQIAQMKAKGLEPATVIETSPKNY
QAWIRVSEKPLDPAIATHISKSIASHFGADANSADWRHYGRLAGFTNKKPEHTNEMGHNPWVLSHESSGK
SATNGTALVDATTKDVQNQQAVTERKTRLESALNGRTSDFPSKAIREYQNQLKTLTERYGESMDISKADY
MICTSMAKKGYDPSSIVEALEQASPELPTRKAGHELDYCQRTVKAVFAQPEVIQAVTQDQTNSRGFGR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 6399 | GenBank | WP_319784505 |
| Name | WP_319784505_pB |
UniProt ID | _ |
| Length | 95 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 95 a.a. Molecular weight: 10957.41 Da Isoelectric Point: 9.7535
>WP_319784505.1 mobilization protein [Oceanisphaera sp. IT1-181]
MSKSDDRLAKLEEKRAKINAEIQRVKAREQQQKRKDETRQKVLIGAMILAKVDSKEWPEDRLQTAMDQFL
DRDSDRELFGLGKKGVVSSDNNAPE
MSKSDDRLAKLEEKRAKINAEIQRVKAREQQQKRKDETRQKVLIGAMILAKVDSKEWPEDRLQTAMDQFL
DRDSDRELFGLGKKGVVSSDNNAPE
Protein domains
No domain identified.
Protein structure
No available structure.
Host bacterium
| ID | 17494 | GenBank | NZ_CP136858 |
| Plasmid name | pB | Incompatibility group | - |
| Plasmid size | 4149 bp | Coordinate of oriT [Strand] | 1640..1663 [-] |
| Host baterium | Oceanisphaera sp. IT1-181 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |