Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116995
• Name: oriT_18-04540|unnamed
• Organism: Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 18-04540
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP063384 (2449..2487 [+], 39 nt)
• oriT length: 39 nt
• IRs (inverted repeats): 1..6, 11..16 (CTTTAC..GTAAAG)
• Location of nic site: 25..26
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 39 nt

>oriT_18-04540|unnamed
CTTTACGCATGTAAAGTATAGTGTGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_EVG01_RS15175_18-04540|unnamed

• ID: 10842
• GenBank: WP_061092469
• Name: mobV_EVG01_RS15175_18-04540|unnamed
• UniProt ID: _
• Length: 405 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 405 a.a.
• Molecular weight: 47877.31 Da
• Isoelectric Point: 9.7774

>WP_061092469.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSFAICRMQKMKSHDLKGIQFHNQRERESKTNSDIDKERSHKNYDFVNDENIDYNERVKEIIESQKTGSR
KTRKDAVLVNELLVTSDRDFFERLDPVEQKRFFEESFKLFSERYGEQNIAYATVHNDEKTPHLHIGVVPM
RDGKLQGKNVFNRAELLWMQDKFPEHMQKLGFDLERGEKGSDRQHIETTKYKKQTLEKEIDFLEKNIVTK
KDELTAFIGKVESDLTVPAKRQTKNVEVPTGEKNLFGKEKTKTVKKPTENVIISRTDYKKLVAAAQDNEK
LKIHLKQVLNTDMAKENRELRENYEVLRGKHNDLVHRFNGMVEDHNELVQENKSLKARVSDLKREIGFVY
KSAKDFLEERIRGLSAFRSAFKDLVDKVKEKTPGSEFERLHKRERRLEQNREMER

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 17428
• GenBank: NZ_CP063384
• Plasmid name: 18-04540|unnamed
• Incompatibility group: -
• Plasmid size: 4265 bp
• Coordinate of oriT [Strand]: 2449..2487 [+]
• Host baterium: Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 18-04540

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -