Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   116984
Name   oriT_pTF14-3-21k in_silico
Organism   Enterococcus hirae strain TF14-3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP109805 (7020..7057 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      14..22, 29..37  (TAAAGTATA..TATACTTTA)
 2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site  
 
 GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pTF14-3-21k
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   17417 GenBank   NZ_CP109805
Plasmid name   pTF14-3-21k Incompatibility group   -
Plasmid size   21813 bp Coordinate of oriT [Strand]   7020..7057 [+]
Host baterium   Enterococcus hirae strain TF14-3

Cargo genes


Drug resistance gene   tet(M), tet(L), poxtA
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -