Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116960 |
| Name | oriT_pUSA500  |
| Organism | Staphylococcus aureus strain 2395 USA500 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP007500 (9156..9400 [-], 245 nt) |
| oriT length | 245 nt |
| IRs (inverted repeats) | 222..227, 237..242 (ATTTTA..TAAAAT) 176..183, 188..195 (CTATCATT..AATGATAG) 1..7, 20..26 (AAGACAT..ATGTCTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 245 nt
>oriT_pUSA500
AAGACATTAGTGATAACTGATGTCTTTTTTTNNATTGTTTTTNCTGTAAAAAANGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAANGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCNAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGAAGATTTTAGAGTTAAATTAAAATTTC
AAGACATTAGTGATAACTGATGTCTTTTTTTNNATTGTTTTTNCTGTAAAAAANGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAANGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCNAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGAAGATTTTAGAGTTAAATTAAAATTTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 17393 | GenBank | NZ_CP007500 |
| Plasmid name | pUSA500 | Incompatibility group | - |
| Plasmid size | 32406 bp | Coordinate of oriT [Strand] | 9156..9400 [-] |
| Host baterium | Staphylococcus aureus strain 2395 USA500 |
Cargo genes
| Drug resistance gene | aac(6')-aph(2'') |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |