Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116953
Name   oriT_p_GA_C_14 in_silico
Organism   Lactiplantibacillus plantarum strain GA_C_14
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP138485 (28686..28706 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_p_GA_C_14
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10824 GenBank   WP_319077510
Name   mobQ_SD763_RS00150_p_GA_C_14 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80130.41 Da        Isoelectric Point: 9.2712

>WP_319077510.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKKRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKIYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVNQGIQETPTQHEGINSQRKNRKAFNQQVSTQRNAQAKYHNLDEKIRNHEHFDALTDELSFS
EKHTISHLSQQLKAYVDLEHLDDKQRMLFNWKNSLLIKHAIGEDVTKQLLTIDQQTTSLAQANQLLNKVV
EQATKKLYPELNFEQTTAAERRELIKETNSEQTIFKGSELAERLADIRSDLLTQQLLTFTKRPYTSWQLV
NQQAQTIEKQLTTVLAKHGHQLDDLKHNDRGMLAAYQPNELEFISKAVKNLRVMREVKAVVQTQYNSILT
TAFPDSDLDKLETIDKEQIYTAVVYYDSELKPLSVNDLSQLQQQPPVVFTSQQHQAGLNYLLGKIELKDI
QNHRLQRVLKHDGTRQLFIGEYGQDPKLDHKQIEIVQTRLKQQAMRFDQYKQAQVKDYQAINYHPTSPKN
YLMNILDEALITILYAKNTDYLRKQQLRGLKETEWEMTKKKRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(277-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   17386 GenBank   NZ_CP138485
Plasmid name   p_GA_C_14 Incompatibility group   -
Plasmid size   40211 bp Coordinate of oriT [Strand]   28686..28706 [+]
Host baterium   Lactiplantibacillus plantarum strain GA_C_14

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21