Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116949
• Name: oriT_DSM 2325|unnamed2
• Organism: Komagataeibacter xylinus strain DSM 2325
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP025271 (2052..2072 [+], 21 nt)
• oriT length: 21 nt
• IRs (inverted repeats): _
• Location of nic site: 15..16
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 21 nt

>oriT_DSM 2325|unnamed2
GTTTGCATAAGTGCGCCCTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_CXP35_RS17890_DSM 2325|unnamed2

• ID: 10820
• GenBank: WP_129552135
• Name: mobQ_CXP35_RS17890_DSM 2325|unnamed2
• UniProt ID: _
• Length: 443 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 443 a.a.
• Molecular weight: 50404.14 Da
• Isoelectric Point: 9.9857

>WP_129552135.1 MobQ family relaxase [Komagataeibacter xylinus]
MAIFHLSVKTVSRSTGRSAVSAAAYRTGDTLTNERDGRHHDYTRRSGVDGSFIMAPTGCDWAMDRSRLWN
TAEQTEKRSNSVTAREYVLALPAELDATERSDLARAFAGALVERYGVAADVALHAPSREGDERNYHAHIL
TTTREVEPDSLGKKTRILDAAKTGGPEIESLRELWAMQCNEALERHNKPARVDHRSYERQGVEKMPTLHL
GPTSVTIERKHQAEAEAERKGEDYQPRTFKAQENRRRRGLNERVRELAQELSGVIQKVHAAKKAAASSLV
RAFGRSRRAEQETEARYAEMLRQREAEQRRQAEEQQERAAEVRRNVLKRQEEQKRRIESRLAQLIREAPE
KRAELFARFYPTDPLARAVDAKLHRMGLEELEAEEKAVRTGLERYEAQERQRRSEGPGMRMKGRGRGRGG
PSRSRDRDTDPDPSDGGSSFEPF

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-220)

Protein structure

No available structure.

Host bacterium

• ID: 17382
• GenBank: NZ_CP025271
• Plasmid name: DSM 2325|unnamed2
• Incompatibility group: -
• Plasmid size: 5309 bp
• Coordinate of oriT [Strand]: 2052..2072 [+]
• Host baterium: Komagataeibacter xylinus strain DSM 2325

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -