Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116942
• Name: oriT_pAPAG21-0333_1
• Organism: Avibacterium paragallinarum strain AG21-0333
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP104915 (2707..2739 [+], 33 nt)
• oriT length: 33 nt
• IRs (inverted repeats): 3..9, 13..19 (ACATTGC..GCAATGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 33 nt

>oriT_pAPAG21-0333_1
GCACATTGCGAAGCAATGTATAAGCGGGCTCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_N8E86_RS11530_pAPAG21-0333_1

• ID: 10814
• GenBank: WP_263499706
• Name: MobA_MobL_N8E86_RS11530_pAPAG21-0333_1
• UniProt ID: _
• Length: 420 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 420 a.a.
• Molecular weight: 49592.67 Da
• Isoelectric Point: 10.3552

>WP_263499706.1 MobA/MobL family protein [Avibacterium paragallinarum]
MSVKIKSRKQHASGKTTNAVRSAAYRHKCAMNDIKNGGSYDYSHLKNEFVDSFIMMNDDIKKAFSNTYLI
QKIKNSKLSEREKNAMVSQWLWSSVEETEKRKDSQLFREVEVSLYHDLTLAENKKLLKSFIKENFTSRGM
IADVAIHDSGDNLHAHIMLTMRDFDCQKCCFSKKNRDWNKLDLVEKWRADWSKKSEKALNREIYHKSFVR
MADEAFKNGEENKAKFFLKLDECKAFHVAKTQLGNKKIYENRDKAYDKLVDEFEKKYNEQEQLKKLAKIT
NLKYLSMENQLDFLYKAFNNISFKIKGSAKGFYHNNEIKTLRNELREKRKLEINVYNKLQRAEKAAKSSI
LRGADAIRHIASNTRSIVARSRLFINRRIRTNVKFDLEHRNGYDSNQRYLSSDKTFDGNQKNYKQTFKMR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (19-240)

Protein structure

No available structure.

Host bacterium

• ID: 17375
• GenBank: NZ_CP104915
• Plasmid name: pAPAG21-0333_1
• Incompatibility group: -
• Plasmid size: 4345 bp
• Coordinate of oriT [Strand]: 2707..2739 [+]
• Host baterium: Avibacterium paragallinarum strain AG21-0333

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -