Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116937 |
| Name | oriT_FDAARGOS_383|unnamed  |
| Organism | Staphylococcus simulans strain FDAARGOS_383 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP023496 (37587..37706 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..9, 13..21 (AGTGGCTAA..TTAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_FDAARGOS_383|unnamed
AGTGGCTAACAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATAATCCCCAACAAGCAGGCGTCGATACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAACAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATAATCCCCAACAAGCAGGCGTCGATACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10811 | GenBank | WP_096754240 |
| Name | Relaxase_CO689_RS00210_FDAARGOS_383|unnamed |
UniProt ID | _ |
| Length | 335 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 335 a.a. Molecular weight: 38380.04 Da Isoelectric Point: 6.3580
>WP_096754240.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSSAQYSWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQERKDDNDIQSKRPTSNRDEPAQRDTGVTQSDW
DKFAQDTNELERRRQAAESARLADEKARRDREERERAEQASRTIIENDRDHGLEL
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSSAQYSWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQERKDDNDIQSKRPTSNRDEPAQRDTGVTQSDW
DKFAQDTNELERRRQAAESARLADEKARRDREERERAEQASRTIIENDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17370 | GenBank | NZ_CP023496 |
| Plasmid name | FDAARGOS_383|unnamed | Incompatibility group | - |
| Plasmid size | 169687 bp | Coordinate of oriT [Strand] | 37587..37706 [+] |
| Host baterium | Staphylococcus simulans strain FDAARGOS_383 |
Cargo genes
| Drug resistance gene | blaZ |
| Virulence gene | - |
| Metal resistance gene | merA |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |