Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116906
Name   oriT_pE28_004 in_silico
Organism   Serratia marcescens strain E28
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP042516 (352..385 [+], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_pE28_004
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10787 GenBank   WP_047359293
Name   mobV_FR888_RS28380_pE28_004 insolico UniProt ID   _
Length   322 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 322 a.a.        Molecular weight: 36621.51 Da        Isoelectric Point: 10.2445

>WP_047359293.1 MULTISPECIES: MobV family relaxase [Enterobacterales]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYQSINRGTRSQVSISPDALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGLAGTIAMASQSAQNAKRVRELQKTMDSQQKRLQSVTEPFKGLSREQ
MTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   17339 GenBank   NZ_CP042516
Plasmid name   pE28_004 Incompatibility group   -
Plasmid size   2694 bp Coordinate of oriT [Strand]   352..385 [+]
Host baterium   Serratia marcescens strain E28

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -